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(-) Description

Title :  CRYSTAL STRUCTURE OF DIMERIC SUDAN VIRUS VP40
 
Authors :  Z. A. Bornholdt, D. M. Ableson, E. O. Saphire
Date :  24 Jun 13  (Deposition) - 21 Aug 13  (Release) - 04 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.83
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Viral Matrix Protein, Matrix Assembly, Viral Budding, Viral Transcription Regulation, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. A. Bornholdt, T. Noda, D. M. Abelson, P. Halfmann, M. R. Wood, Y. Kawaoka, E. O. Saphire
Structural Rearrangement Of Ebola Virus Vp40 Begets Multipl Functions In The Virus Life Cycle.
Cell(Cambridge, Mass. ) V. 154 763 2013
PubMed-ID: 23953110  |  Reference-DOI: 10.1016/J.CELL.2013.07.015

(-) Compounds

Molecule 1 - MATRIX PROTEIN VP40
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 44-326
    Gene: VP40
    Organism Common: SEBOV
    Organism Scientific: SUDAN EBOLAVIRUS
    Organism Taxid: 186540
    Synonym: MEMBRANE-ASSOCIATED PROTEIN VP40

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4LD8)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Thr A:192 -Asp A:193

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:235
                                                                                                                                                                                                                                                                           
               SCOP domains d4ld8a1 A:44-193 automated matches                                                                                                                    d4ld8a2 A:203-308 automated matches                                                   SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........ee....hhhhh......eeeeeeeeeeeee..eeeeeeeeeeeeeeee.....hhhhhhhhhhh.eeeeeee......eeeeeee........hhhhhhheeeeehhhhh.........eeeeeeeeeeeee..........eeee.......ee.....hhhhhhhhhhhheeeeeehhh.eeeee.hhhhhhhhhh.......eeeee.hhhhh....eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4ld8 A  44 MDTPSNSMRPVADDNIDHTSHTPNGVASAFILEATVNVISGPKVLMKQIPIWLPLGIADQKTYSFDSTTAAIMLASYTITHFGKANNPLVRVNRLGQGIPDHPLRLLRMGNQAFLQEFVLPPVQLPQYFTFDLTALKLVTQPLPAATWTDLRPGLSFHPKLRPVLLPGKDKIQTIVNLMQDFKIVPIDPAKSIIGIEVPELLVHKLTGKKKNGQPIIPVLLPKYIGPGDLTMVIT 308
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193|      212       235       245       255       265       275|      288     ||303     
                                                                                                                                                                               193|               221|                                     275|            294|        
                                                                                                                                                                                203                235                                      279             300
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4LD8)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4LD8)

(-) Gene Ontology  (14, 14)

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    Thr A:192 - Asp A:193   [ RasMol ]  
 
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4ldb 4ldd 4ldi 4ldm