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(-) Description

Title :  B. FRAGILIS NANU
 
Authors :  J. B. Rafferty, C. Phansopa, G. P. Stafford
Date :  14 Jun 13  (Deposition) - 01 Jan 14  (Release) - 12 Mar 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.61
Chains :  Asym./Biol. Unit :  A
Keywords :  Susd-Like, Sialic Acid Binding, Nano, Outer Membrane, Sialic Acid- Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Phansopa, S. Roy, J. B. Rafferty, C. W. Douglas, J. Pandhal, P. C. Wright, D. J. Kelly, G. P. Stafford
Structural And Functional Characterization Of Nanu, A Novel High-Affinity Sialic Acid-Inducible Binding Protein Of Oral And Gut-Dwelling Bacteroidetes Species.
Biochem. J. V. 458 499 2014
PubMed-ID: 24351045  |  Reference-DOI: 10.1042/BJ20131415

(-) Compounds

Molecule 1 - NANU SIALIC ACID BINDING PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PET 21
    Gene: BF1720, BF9343_1638
    Organism Scientific: BACTEROIDES FRAGILIS
    Organism Taxid: 272559
    Strain: NCTC 9343

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric/Biological Unit (3, 6)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2EDO3Ligand/Ion1,2-ETHANEDIOL
3NA1Ligand/IonSODIUM ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:223 , GLY A:478 , ALA A:479 , HOH A:786 , HOH A:968BINDING SITE FOR RESIDUE ACT A 601
2AC2SOFTWAREILE A:18 , PRO A:20 , TYR A:259 , ASN A:260 , HOH A:1065BINDING SITE FOR RESIDUE ACT A 602
3AC3SOFTWAREARG A:460 , MET A:461 , PHE A:464 , MET A:465 , ARG A:470 , ASP A:473 , HOH A:724 , HOH A:729BINDING SITE FOR RESIDUE EDO A 603
4AC4SOFTWARELYS A:88 , GLU A:499 , LEU A:502 , GLN A:510 , HOH A:795BINDING SITE FOR RESIDUE EDO A 604
5AC5SOFTWARETHR A:483 , THR A:486 , HOH A:771 , HOH A:1021 , HOH A:1120BINDING SITE FOR RESIDUE NA A 605
6AC6SOFTWARESER A:196 , PHE A:197 , ASN A:246 , HOH A:732BINDING SITE FOR RESIDUE EDO A 606

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4L7T)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:432 -Pro A:433

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4L7T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4L7T)

(-) Exons   (0, 0)

(no "Exon" information available for 4L7T)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:490
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee.........hhhhh............hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhh....eeeee.......hhhhhhhhhhhh.hhhhhhhhh......hhhhhhhhhh......ee..hhhhhh.....hhhhhheeeeeee.....eeeeeeee...................eeeeehhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhh.........hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh..hhhhh....hhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l7t A  18 IDPTSSIADSNYWKTEAQFSTFNVGLHALLRECSFNFFLLGEPRADIYGDVPFGGEATQGMERLPFNTINKENTGISNFAGMYKVINQINLMIAKTKETTVLSEAGKNYYLGEAYGMRAYLYFHLLRSWGDVILYLDYTNSKAASPAEEVMKQIKEDITASEKGFGSDYSFKYGRYYWSMAATQMLKGEVYLWSGRQMGGGTADYTTAKTALQSIVSNANVSLQDDFSKVFAYNNKDNSEIIFSIRNAKDEYNMWDDRFRQNLVPQQAYMTSTYCNKEGVSFKDLPEGQLNGLIRLQIRYDLYNKAFRDGDTRKDASMTAVYQKQQDGTVKYIAPFCNKYQGVLLDGASQRSFLNDYPIYRYADCLLLLAEAKALLGEDPTAEINQVRERAYGKEFFEANKATLAYPNDKGDFYTDNKYMSGDEDPLEAILKERMREFMFEGKRWYDLRLLGADYVTKRTSAVATRLLWPINESVLTDNPALKQTPGYQN 516
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157|      176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516
                                                                                                                                                                     157|                                                                                                                                                                                                                                                                                                                                                             
                                                                                                                                                                      167
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4L7T)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4L7T)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4L7T)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4L7T)

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  Cis Peptide Bonds
    Tyr A:432 - Pro A:433   [ RasMol ]  
 

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