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(-) Description

Title :  CRYSTAL STRUCTURE OF D78N MUTANT CLAVIBACTER MICHIGANENSIS EXPANSIN IN COMPLEX WITH CELLOHEXAOSE
 
Authors :  N. H. Yennawar, H. P. Yennawar, N. Georgelis, D. Cosgrove
Date :  07 Jun 13  (Deposition) - 26 Mar 14  (Release) - 21 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  C  (1x)
Keywords :  Cellulose Binding Protein, Cell Wall Loosening, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. H. Yennawar, H. P. Yennawar, N. Georgelis, D. Cosgrove
Crystal Structure Of Wild Type And D78N Mutant Clavibacter Michiganensis Expansin, In Apo Form And In Complex With Oligosaccharides
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CELLULOSE BINDING PROTEIN
    Chains: A, C
    EC Number: 3.2.1.4
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 546-746
    Gene: CELA, PCM1_0020
    Mutation: YES
    Organism Scientific: CLAVIBACTER MICHIGANENSIS SUBSP. MICHIGANENSIS
    Organism Taxid: 443906
    Strain: NCPPB 382

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AC
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1CE62Ligand/IonCELLOHEXAOSE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1CE61Ligand/IonCELLOHEXAOSE
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1CE61Ligand/IonCELLOHEXAOSE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:19 , GLY A:21 , ASN A:22 , SER A:24 , LYS A:115 , GLU A:116 , GLY A:117 , TRP A:121 , TRP A:122 , TYR A:153 , HOH A:408 , HOH A:513 , HOH A:516 , HOH A:524 , HOH A:609 , HOH A:619 , HOH A:672 , HOH A:679 , HOH A:705 , HOH A:711 , HOH A:714 , HOH A:734BINDING SITE FOR RESIDUE CE6 A 301
2AC2SOFTWAREARG A:103 , HOH A:405 , ALA C:19 , GLY C:21 , ASN C:22 , SER C:24 , LYS C:115 , GLU C:116 , GLY C:117 , TRP C:121 , TRP C:122 , TYR C:153 , HOH C:462 , HOH C:479 , HOH C:481 , HOH C:504 , HOH C:514 , HOH C:516 , HOH C:537 , HOH C:550 , HOH C:572 , HOH C:588 , HOH C:606 , HOH C:618 , HOH C:631 , HOH C:639 , HOH C:669 , HOH C:674 , HOH C:675BINDING SITE FOR RESIDUE CE6 C 301

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:23 -A:48
2A:69 -A:72
3C:23 -C:48
4C:69 -C:72

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4L48)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4L48)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4L48)

(-) Exons   (0, 0)

(no "Exon" information available for 4L48)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:202
                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee.......................eeeeehhhhh.......eeeeee..eeeeeeeeeee......eeeeehhhhhhhhhhhhh.eeeeeee.........eeee.........eeeee.....eeeeeeee..eeee.ee.....ee.........eeeeeee....eeeeeee......eee......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l48 A   1 MTTHGRATHYSLGQGNTIANGNCSMPAVPADRMYVAVSSPEYSGAAACGTFLDVTGPKGTVRVQVADQCHGCEVGHLNLSEEAFRALGDFNAGIIPISYVTVRDPAGPTVAIRVKEGSSRWWAGLQVLNAGNRIDRVEIQAGRQWLPLTRTDYGYWVTPSPIQDGPLTVKVTDQYGRAVVLPGLRMAPGEIQRTASRFYPVH 202
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200  


Chain C from PDB  Type:PROTEIN  Length:202
                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee.......................eeeeehhhhh.......eeeeee..eeeeeeeeeee......eeeeehhhhhhhhhhhhh.eeeeeee.........eeee.........eeeee.....eeeeeeee..eeee.ee.....ee.........eeeeeee....eeeeeee......eee......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l48 C   1 MTTHGRATHYSLGQGNTIANGNCSMPAVPADRMYVAVSSPEYSGAAACGTFLDVTGPKGTVRVQVADQCHGCEVGHLNLSEEAFRALGDFNAGIIPISYVTVRDPAGPTVAIRVKEGSSRWWAGLQVLNAGNRIDRVEIQAGRQWLPLTRTDYGYWVTPSPIQDGPLTVKVTDQYGRAVVLPGLRMAPGEIQRTASRFYPVH 202
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4L48)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4L48)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4L48)

(-) Gene Ontology  (10, 10)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A5CLK3_CLAM3 | A5CLK3: 4jcw 4js7

(-) Related Entries Specified in the PDB File

4jcw WILD TYPE PROTEIN IN COMPLEX WITH CELLEPENTAOSE
4jjo WILD TYPE APO FORM OF THE SAME PROTEIN
4js7 D78N MUTANT APO FORM OF SAME PROTEIN