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(-) Description

Title :  STRUCTURE OF THE FIRST RCC1-LIKE DOMAIN OF HERC2
 
Authors :  W. Tempel, M. B. Khan, A. Dong, J. Hu, Y. Li, C. Bountra, C. H. Arrowsmith, A. M. Edwards, Y. Tong, Structural Genomics Consortium (Sgc)
Date :  03 Jun 13  (Deposition) - 03 Jul 13  (Release) - 03 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Rcc1, Rld, Beta-Propeller, Herc2, Structural Genomics Consortium, Sgc, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Tempel, M. B. Khan, A. Dong, J. Hu, Y. Li, C. Bountra, C. H. Arrowsmith A. M. Edwards, Y. Tong
Structure Of The First Rcc1-Like Domain Of Herc2
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - E3 UBIQUITIN-PROTEIN LIGASE HERC2
    Chains: A, B, C
    EC Number: 6.3.2.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28-MHL
    Expression System Strain: BL21 (DE3)-V2R
    Expression System Taxid: 469008
    Gene: HERC2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HECT DOMAIN AND RCC1-LIKE DOMAIN-CONTAINING PROTEIN 2

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 45)

Asymmetric Unit (2, 45)
No.NameCountTypeFull Name
1SO411Ligand/IonSULFATE ION
2UNX34Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 1 (2, 13)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION
2UNX9Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 2 (2, 16)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION
2UNX12Ligand/IonUNKNOWN ATOM OR ION
Biological Unit 3 (2, 16)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION
2UNX13Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:780 , GLU A:781 , TRP A:782 , LYS B:434BINDING SITE FOR RESIDUE SO4 A 801
02AC2SOFTWARECYS A:645 , LYS A:646 , THR A:647 , LYS A:649BINDING SITE FOR RESIDUE SO4 A 802
03AC3SOFTWARESER A:666 , LYS A:683 , ARG A:688 , THR A:719BINDING SITE FOR RESIDUE SO4 A 803
04AC4SOFTWAREARG A:462 , HIS A:505 , TYR A:507BINDING SITE FOR RESIDUE SO4 A 804
05AC5SOFTWAREARG A:468 , ASN A:469 , LYS B:434BINDING SITE FOR RESIDUE SO4 B 801
06AC6SOFTWARESER B:666 , LYS B:683 , ARG B:688BINDING SITE FOR RESIDUE SO4 B 802
07AC7SOFTWARECYS B:645 , LYS B:646 , THR B:647 , LYS B:649BINDING SITE FOR RESIDUE SO4 B 803
08AC8SOFTWARELYS B:461 , ARG B:462 , HIS B:505 , TYR B:507BINDING SITE FOR RESIDUE SO4 B 804
09AC9SOFTWARECYS C:645 , LYS C:646 , THR C:647 , LYS C:649BINDING SITE FOR RESIDUE SO4 C 801
10BC1SOFTWARESER C:666 , LYS C:683 , ARG C:688 , THR C:719BINDING SITE FOR RESIDUE SO4 C 802
11BC2SOFTWAREARG C:462 , HIS C:505 , TYR C:507BINDING SITE FOR RESIDUE SO4 C 803

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4L1M)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4L1M)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4L1M)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4L1M)

(-) Exons   (0, 0)

(no "Exon" information available for 4L1M)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:358
                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee........eehhhhhh..eeeeee...eeeeee....eeeee........ee........eeeee......eeeeee....eeeee.hhhhh........eeeeee.hhhh..hhhh.eeeeee...eeeeee....eeeee.hhhhh........eeeeee.hhhh...eeeeee.....eeeeee....eeeee.hhhhh........eeeeee.hhhh...eeeeeee..eeeeee....eeeee.hhhhh........eeeeee.hhhh...eeeeee...eeeeee....eeeeee............eeeeeee........eeeeee...eeeeee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l1m A 422 LQEVIGWGLIGWKYGPIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQHFDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFAWSSCSEWSI 784
                                   431   ||  446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776        
                                       435|                                                                                                                                                                                                                                                                                                                                                       
                                        441                                                                                                                                                                                                                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:357
                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.............eehhhhhh..eeeeee...eeeeee....eeeee........ee........eeeee......eeeeee....eeeee.hhhhh........eeeeee.hhhh......eeeeee...eeeeee....eeeee.hhhhh........eeeeee.hhhh...eeeeee.....eeeeee....eeeee.hhhhh........eeeeee.hhhh...eeeeeee..eeeeee....eeeee.hhhhh........eeeeee.hhhh...eeeeee...eeeeee....eeeeee............eeeeeee........eeeeee...eeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l1m B 422 LQEVIGWGLIGWKYYANVIGPIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQHFDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFAWSSC 779
                                   431       441       451       461       471       481       491       501       511       521       531       541     ||552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772       
                                                                                                                                                       547|                                                                                                                                                                                                                                      
                                                                                                                                                        549                                                                                                                                                                                                                                      


Chain C from PDB  Type:PROTEIN  Length:353
                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee.......eehhhhhh..eeeeee...eeeeee....eeeee........ee........eeeee......eeeeee....eeeee.hhhhh........eeeeee.hhhh..hhhh.eeeeee...eeeeee....eeeee.hhhhh........eeeeee.hhhh...eeeeee.....eeeeee....eeeee.hhhhh........eeeeee.hhhh...eeeeeee..eeeeee....eeeee.hhhhh........eeeeee.hhhh...eeeeee...eeeeee....eeeeee............eeeeeee........eeeeee...eeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4l1m C 422 LQEVIGWGLIGWKGPIQCEGLANLGVTQIACAEKRFLILSRNGRVYTQAYNSDTLAPQLVQGLASRNIVKIAAHSDGHHYLALAATGEVYSWGCGDGGRLGHGDTVPLEEPKVISAFSGKQAGKHVVHIACGSTYSAAITAEGELYTWGRGNYGRLGHGSSEDEAIPMLVAGLKGLKVIDVACGSGDAQTLAVTENGQVWSWGDGDYGKLGRGGSDGCKTPKLIEKLQDLDVVKVRCGSQFSIALTKDGQVYSWGKGDNQRLGHGTEEHVRYPKLLEGLQGKKVIDVAAGSTHCLALTEDSEVHSWGSNDQCQHFDTLRVTKPEPAALPGLDTKHIVGIACGPAQSFAWSSCS 780
                                   431  ||   447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777   
                                      434|                                                                                                                                                                                                                                                                                                                                                   
                                       441
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4L1M)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4L1M)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4L1M)

(-) Gene Ontology  (24, 24)

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        HERC2_HUMAN | O95714: 2keo 3kci

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