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(-) Description

Title :  CRYSTAL STRUCTURE OF THE SECRETED PROTEIN HP1454 FROM THE HUMAN PATHOGEN HELICOBACTER PYLORI
 
Authors :  S. Quarantini, L. Cendron, W. Fischer, G. Zanotti
Date :  30 May 13  (Deposition) - 04 Jun 14  (Release) - 22 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Helicobacter Pylori, Secreted Proteins, Outer Membrane, Tol-Pal System, Three-Helix Bundle, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Quarantini, L. Cendron, G. Zanotti
Crystal Structure Of The Secreted Protein Hp1454 From The Human Pathogen Helicobacter Pylori.
Proteins V. 82 2868 2014
PubMed-ID: 24854568  |  Reference-DOI: 10.1002/PROT.24608

(-) Compounds

Molecule 1 - LPP20 LIPOFAMILY PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: HP1454-PET151
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: HP1454, OUO_1490
    Mutation: YES
    Organism Scientific: HELICOBACTER PYLORI R046WA
    Organism Taxid: 1145116
    Strain: CCUG 17874

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:101BINDING SITE FOR RESIDUE 1PE A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KZS)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys A:195 -Pro A:196

 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:242
                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhh...eeeeeeee..eeeeeeeeehhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh.....eeee......hhhhhhhhhhhhh...eee......ee..............................hhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kzs A  34 QKGYLYGSGSATSKEASKQKALADLVASISVVVNSQIHIQKSRINLKTDDLELNNVEIVNQEVQKGIYYTRVRINQNLFLQGLRDKYNALYGQFSTLMPKVCKGVFLQQSKSMGDLLAKAMPIERILKAYSVPVGSLENYEKIYYQNAFKPKVQITFDNNSDAEIKAALISAYARVLTPSDEEKLYQIKNEVFTDSANGITRIRVVVSASDCQGTPVLNRSLEVDEKNKNFAITRLQSLLYK 287
                                    43        53        63        73  ||    95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285  
                                                                     76|                                                                                                                                                                                                      
                                                                      89
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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