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Asym./Biol. Unit (Jmol Viewer)

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Title :   CYTOSOLIC 5'-NUCLEOTIDASE III COMPLEXED WITH CYTIDINE 5'-MONOPHOSPHATE

Authors :   E. Bitto, C. A. Bingman, C. L. Grobosky

Date :   24 May 13 (Deposition) - 12 Jun 13 (Release) - 12 Jun 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym./Biol. Unit : A

Keywords :   Substrate Complex, Had Superfamily, Nucleotidase, Umph-1, Cytosolic 5'-Nucleotidase Iii, P5N-1, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Bitto, C. A. Bingman, C. L. Grobosky
Cytosolic 5'-Nucleotidase Iii Complexed With Cytidine 5'-Monophosphate
To Be Published
PubMed: search

Molecule 1 - CYTOSOLIC 5'-NUCLEOTIDASE 3
	Chains	:	A
	EC Number	:	3.1.3.5
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PVP16-GW
	Expression System Strain	:	ROSETTA 2
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	NT5C3
	Mutation	:	YES
	Organism Common	:	MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Synonym	:	CYTOSOLIC 5'-NUCLEOTIDASE III, CN-III, LUPIN, PYRIMIDINE 5'- NUCLEOTIDASE 1, P5'N-1, P5N-1, PN-I

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (5, 14)

No.	Name	Count	Type	Full Name
1	BME	2	Ligand/Ion	BETA-MERCAPTOETHANOL
2	C	1	Ligand/Ion	CYTIDINE-5'-MONOPHOSPHATE
3	EDO	9	Ligand/Ion	1,2-ETHANEDIOL
4	EPE	1	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
5	MG	1	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (14, 14)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:49 , PHE A:50 , ASN A:51 , THR A:66 , HIS A:68 , ASN A:69 , GLU A:96 , TRP A:113 , TYR A:114 , SER A:117 , SER A:164 , ALA A:165 , GLY A:166 , LYS A:213 , EDO A:306 , MG A:314 , HOH A:401 , HOH A:402 , HOH A:403 , HOH A:476 , HOH A:482 , HOH A:490 , HOH A:539 , HOH A:692	BINDING SITE FOR RESIDUE C A 301
02	AC2	SOFTWARE	CYS A:34 , LYS A:38	BINDING SITE FOR RESIDUE BME A 302
03	AC3	SOFTWARE	TYR A:59 , LYS A:62 , ARG A:63 , CYS A:64 , ASP A:139	BINDING SITE FOR RESIDUE BME A 303
04	AC4	SOFTWARE	GLU A:206 , GLN A:294 , LYS A:295 , LEU A:297 , HOH A:520	BINDING SITE FOR RESIDUE EPE A 304
05	AC5	SOFTWARE	ALA A:41 , ALA A:42 , HIS A:156 , GLY A:157 , ASN A:230 , HOH A:613 , HOH A:617	BINDING SITE FOR RESIDUE EDO A 305
06	AC6	SOFTWARE	ARG A:63 , ASN A:69 , LYS A:89 , C A:301 , HOH A:587	BINDING SITE FOR RESIDUE EDO A 306
07	AC7	SOFTWARE	ASP A:98 , LEU A:101 , VAL A:103 , LYS A:106	BINDING SITE FOR RESIDUE EDO A 307
08	AC8	SOFTWARE	TYR A:109 , HOH A:449 , HOH A:661	BINDING SITE FOR RESIDUE EDO A 308
09	AC9	SOFTWARE	LYS A:128 , ASP A:169 , GLU A:172 , EDO A:310	BINDING SITE FOR RESIDUE EDO A 309
10	BC1	SOFTWARE	GLU A:172 , ARG A:176 , TYR A:181 , SER A:183 , ASN A:184 , EDO A:309 , HOH A:412 , HOH A:554	BINDING SITE FOR RESIDUE EDO A 310
11	BC2	SOFTWARE	LYS A:18 , GLU A:144 , GLU A:283 , SER A:285 , HOH A:518	BINDING SITE FOR RESIDUE EDO A 311
12	BC3	SOFTWARE	VAL A:140 , MET A:141 , LEU A:142 , HOH A:509 , HOH A:670	BINDING SITE FOR RESIDUE EDO A 312
13	BC4	SOFTWARE	LYS A:24 , PRO A:26 , THR A:27 , ARG A:28 , GLU A:31 , HOH A:615	BINDING SITE FOR RESIDUE EDO A 313
14	BC5	SOFTWARE	ASP A:49 , ASN A:51 , ASP A:238 , C A:301 , HOH A:401 , HOH A:402	BINDING SITE FOR RESIDUE MG A 314

(no "SS Bond" information available for 4KX5)

(no "Cis Peptide Bond" information available for 4KX5)

(no "SAP(SNP)/Variant" information available for 4KX5)

(no "PROSITE Motif" information available for 4KX5)

(no "Exon" information available for 4KX5)

Asymmetric/Biological Unit

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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:291
                                                                                                                                                                                                                                                                                                                                   
               SCOP domains d4kx5a_ A: Cytosolic 5'-nucleotidase III                                                                                                                                                                                                                                                            SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh...ee..hhhhhhhhhhhhhhhhhhheeeee.........ee..ee..hhhhhhhh....hhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh.......hhhhhhhhhhhh...eeeeeeeehhhhhhhhhhh......eeeeee.eee.....eeee........hhhhhhhhhhhhhhh.....eeeeee.hhhhhhh........eeeeeeee..hhhhhhhhhhhhh.eeee....hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kx5 A   7 AVHLKMMPEFQKSSVRIKNPTRVEEIICGLIKGGAAKLQIITDFNMTLSRFSYNGKRCPTCHNIIDNCKLVTDECRRKLLQLKEQYYAIEVDPVLTVEEKFPYMVEWYTKSHGLLIEQGIPKAKLKEIVADSDVMLKEGYENFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAGVYHSNVKVVSNFMDFDENGVLKGFKGELIHVFNKHDGALKNTDYFSQLKDNSNIILLGDSQGDLRMADGVANVEHILKIGYLNDRVDELLEKYMDSYDIVLVKEESLEVVNSILQKTL 297
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: Alpha and beta proteins (a/b) (23833)

Fold: HAD-like (349)

Superfamily: HAD-like (349)

Family: Pyrimidine 5'-nucleotidase (UMPH-1) (13)

Protein domain: Cytosolic 5'-nucleotidase III (9)

Mouse (Mus musculus) [TaxId: 10090] (8)

d4kx5a_

(no "CATH Domain" information available for 4KX5)

(no "Pfam Domain" information available for 4KX5)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	4kx5
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UniProtKB/Swiss-Prot
	5NT3A_MOUSE \| Q9D020	:	2bdu 2g06 2g07 2g08 2g09 2g0a 2q4t 4fe3 4kx3

2g06	CYTOSOLIC 5'-NUCLEOTIDASE III WITH BOUND MAGNESIUM(II) IN AN OPEN FORM
2g09	CYTOSOLIC 5'-NUCLEOTIDASE III COMPLEX WITH PHOSPHATE IN THE ACTIVE SITE
4fe3	CYTOSOLIC 5'-NUCLEOTIDASE III COMPLEXED WITH URIDINE MONOPHOSPHATE
4kx3	CYTOSOLIC 5'-NUCLEOTIDASE III COMPLEXED WITH THYMIDINE 5'- MONOPHOSPHATE

Description

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Ligands, Modified Residues, Ions (5, 14)

Sites (14, 14)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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Exons (0, 0)

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SCOP Domains (1, 1)

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Gene Ontology (14, 14)

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