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(-) Description

Title :  CRYSTAL STRUCTURE OF NAA10 (ARD1) BOUND TO ACCOA
 
Authors :  G. P. Liszczak, R. Q. Marmorstein
Date :  23 May 13  (Deposition) - 31 Jul 13  (Release) - 09 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Acetyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Liszczak, J. M. Goldberg, H. Foyn, E. J. Petersson, T. Arnesen, R. Marmorstein
Molecular Basis For N-Terminal Acetylation By The Heterodimeric Nata Complex.
Nat. Struct. Mol. Biol. V. 20 1098 2013
PubMed-ID: 23912279  |  Reference-DOI: 10.1038/NSMB.2636

(-) Compounds

Molecule 1 - N-TERMINAL ACETYLTRANSFERASE A COMPLEX CATALYTIC SUBUNIT ARD1
    Chains: A, B
    EC Number: 2.3.1.88
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: AMINO ACIDS 1-156
    Gene: ARD1, SPAC15E1.08
    Organism Common: FISSION YEAST
    Organism Scientific: SCHIZOSACCHAROMYCES POMBE
    Organism Taxid: 284812
    Strain: 972 / ATCC 24843
    Synonym: NATA COMPLEX SUBUNIT ARD1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 18)

Asymmetric Unit (2, 18)
No.NameCountTypeFull Name
1ACO2Ligand/IonACETYL COENZYME *A
2MSE16Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 9)
No.NameCountTypeFull Name
1ACO1Ligand/IonACETYL COENZYME *A
2MSE8Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 9)
No.NameCountTypeFull Name
1ACO1Ligand/IonACETYL COENZYME *A
2MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:21 , GLU A:24 , SER A:75 , VAL A:76 , SER A:77 , VAL A:78 , ARG A:83 , HIS A:84 , LEU A:85 , GLY A:86 , LEU A:87 , ALA A:88 , LYS A:89 , HIS A:111 , ASN A:116 , ARG A:117 , ALA A:118 , HIS A:121 , LEU A:122 , TYR A:123 , THR A:126 , HOH A:301 , HOH A:307 , HOH A:332 , HOH A:351 , HOH A:368 , HOH A:371 , HOH A:395 , HOH A:412 , ARG B:97 , HOH B:381BINDING SITE FOR RESIDUE ACO A 201
2AC2SOFTWAREARG A:97 , HOH A:338 , ASN B:21 , GLU B:24 , SER B:75 , VAL B:76 , SER B:77 , VAL B:78 , ARG B:83 , HIS B:84 , LEU B:85 , GLY B:86 , LEU B:87 , ALA B:88 , LYS B:89 , HIS B:111 , ASN B:116 , ALA B:118 , HIS B:121 , LEU B:122 , TYR B:123 , THR B:126 , HOH B:301 , HOH B:307 , HOH B:312 , HOH B:319 , HOH B:351 , HOH B:385 , HOH B:393 , HOH B:394BINDING SITE FOR RESIDUE ACO B 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KVX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4KVX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KVX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KVX)

(-) Exons   (0, 0)

(no "Exon" information available for 4KVX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:152
                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.hhhhhhhhhhh...hhhhhhhhhhhhhhhhh.....eeee.....eeeeeeeee...hhhhh..eeeeeeee.hhhh..hhhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhh....eeeeee.........eeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kvx A   2 DIRPARISDLTGmQNCNLHNLPENYQLKYYLYHAISWPmLSYVATDPKGRVVGYVLAKmEEEPKDGIPHGHITSVSVmRSYRHLGLAKRLmVQSQRAmVEVYGAKYmSLHVRKSNRAAIHLYRDTLQFDVQGIESKYYADGEDAYAmHKDFS 153
                                    11  |     21        31        41        51        61        71       |81        91|      101      |111       121       131       141      |151  
                                       14-MSE                    40-MSE              60-MSE             79-MSE       92-MSE 99-MSE  108-MSE                                 148-MSE 


Chain B from PDB  Type:PROTEIN  Length:152
                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.hhhhhhhhhhh...hhhhhhhhhhhhhhhhh.....eeee.....eeeeeeeee...hhhhh.eeeeeeeee.hhhh..hhhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhh....eeeeee.........eeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kvx B   2 DIRPARISDLTGmQNCNLHNLPENYQLKYYLYHAISWPmLSYVATDPKGRVVGYVLAKmEEEPKDGIPHGHITSVSVmRSYRHLGLAKRLmVQSQRAmVEVYGAKYmSLHVRKSNRAAIHLYRDTLQFDVQGIESKYYADGEDAYAmHKDFS 153
                                    11  |     21        31        41        51        61        71       |81        91|      101      |111       121       131       141      |151  
                                       14-MSE                    40-MSE              60-MSE             79-MSE       92-MSE 99-MSE  108-MSE                                 148-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4KVX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KVX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KVX)

(-) Gene Ontology  (16, 16)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ARD1_SCHPO | Q9UTI3: 4kvm 4kvo

(-) Related Entries Specified in the PDB File

4kvm 4kvo