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(-) Description

Title :  CRYSTAL STRUCTURE OF LEGIONELLA PNEUMOPHILA LPP1115 / KAIB
 
Authors :  P. Petit, P. J. Stogios, A. Stein, Z. Wawrzak, T. Skarina, C. Daniels, R. C. Buchrieser, A. Savchenko, A. Joachimiak, Midwest Center For St Genomics (Mcsg)
Date :  22 May 13  (Deposition) - 05 Jun 13  (Release) - 08 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Midwest Center For Structural Genomics, Mcsg, Psi-Biology, Alpha And Beta Proteins (A/B), Thioredoxin Fold, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Loza-Correa, T. Sahr, M. Rolando, C. Daniels, P. Petit, T. Skarina, L. Gomez Valero, D. Dervins-Ravault, N. Honore, A. Savchenko, C. Buchrieser
The Legionella Pneumophila Kai Operon Is Implicated In Stress Response And Confers Fitness In Competitive Environments.
Environ Microbiol V. 16 359 2014
PubMed-ID: 23957615  |  Reference-DOI: 10.1111/1462-2920.12223

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN LPP1115
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: P15TV-LIC
    Expression System Strain: BL21(DE3)-RIPL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: LPP1115
    Organism Scientific: LEGIONELLA PNEUMOPHILA
    Organism Taxid: 297246
    Strain: PARIS

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4KUN)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KUN)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Thr A:59 -Pro A:60
2Glu A:66 -Pro A:67
3Leu A:68 -Pro A:69
4Thr B:59 -Pro B:60
5Glu B:66 -Pro B:67
6Leu B:68 -Pro B:69

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KUN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KUN)

(-) Exons   (0, 0)

(no "Exon" information available for 4KUN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:91
                                                                                                                          
               SCOP domains d4kuna_ A: automated matches                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee...hhhhhhhhhhhhhhh........eeeeeee.hhh.hhhhhh......eeeeee....eeee....hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                  4kun A  0 GmTRTKLKLFVIGNSAISKRAIINLQSICSDPKLADLCDIEVVDLCKNKGIAEQEKILATPILIKKEPLPERRIIGDLSDKQKVISALEmD 90
                             |       9        19        29        39        49        59        69        79        89 
                             |                                                                                      89-MSE
                             1-MSE                                                                                     


Chain B from PDB  Type:PROTEIN  Length:90
                                                                                                                         
               SCOP domains d4kunb_ B: automated matches                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeee...hhhhhhhhhhhhhhh........eeeeeee.....hhhhhh......eeeeee....eeee....hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  4kun B  1 mTRTKLKLFVIGNSAISKRAIINLQSICSDPKLADLCDIEVVDLCKNKGIAEQEKILATPILIKKEPLPERRIIGDLSDKQKVISALEmD 90
                            |       10        20        30        40        50        60        70        80        90
                            |                                                                                      89-MSE
                            1-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KUN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KUN)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4KUN)

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  Cis Peptide Bonds
    Glu A:66 - Pro A:67   [ RasMol ]  
    Glu B:66 - Pro B:67   [ RasMol ]  
    Leu A:68 - Pro A:69   [ RasMol ]  
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