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(-) Description

Title :  STRUCTURE OF A TYPE VI SECRETION SYSTEM EFFECTOR-IMMUNITY COMPLEX FROM PSEUDOMONAS PROTEGENS
 
Authors :  J. C. Whitney, S. Chou, T. E. Gardiner, J. D. Mougous
Date :  19 May 13  (Deposition) - 31 Jul 13  (Release) - 09 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.44
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Glycoside Hydrolase, Hydrolase, Pfl_3036 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. C. Whitney, S. Chou, A. B. Russell, J. Biboy, T. E. Gardiner, M. A. Ferrin, M. Brittnacher, W. Vollmer, J. D. Mougous
Identification, Structure, And Function Of A Novel Type Vi Secretion Peptidoglycan Glycoside Hydrolase Effector-Immunity Pair.
J. Biol. Chem. V. 288 26616 2013
PubMed-ID: 23878199  |  Reference-DOI: 10.1074/JBC.M113.488320

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PFL_3037
    Organism Scientific: PSEUDOMONAS PROTEGENS
    Organism Taxid: 220664
    Strain: STRAIN PF-5 / ATCC BAA-477
 
Molecule 2 - PUTATIVE LIPOPROTEIN
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PFL_3036
    Organism Scientific: PSEUDOMONAS PROTEGENS
    Organism Taxid: 220664
    Strain: STRAIN PF-5 / ATCC BAA-477

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 4KT3)

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:32 -A:177
2B:117 -B:152

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ala A:89 -Pro A:90

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KT3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KT3)

(-) Exons   (0, 0)

(no "Exon" information available for 4KT3)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:141
                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh...hhhhhhhh.............eee.....eee..hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh.........hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kt3 A  29 ARLCNNISAVTFVSKYKAVCQPIADQLDLPVENLLGLAAQESQYGTGRIARELNNYFSmHAPAPLQIGAEAPSIKVAKFDSFQKSAQSFASSFGTAVRGQRDPmAFAQALVRSGYNTGNGRDGFARYLADIIIAVRGRmAC 177
                                    38        48        58        68        78        88        98 ||    112       122       132   |   142       156       166       176 
                                                                                     87-MSE      100|                            136-MSE        151|                175-MSE
                                                                                                  105                                            156                     


Chain B from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhh.....hhhhhhhhhhhhhhhh........eeee..............eeeeeeee........eeeeeeeee.....eee....ee..hhhhhhhhhhhhhhhh..hhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kt3 B  27 SLQPARIKDSGLTREQAEQVLRVALKHQDYQLQRPGVFIDGDLQDENGKPPHPGYYDFSLGYNDPKAGATEYWGLFSVSLNTGDTWEINSCKRLDGAELRALQRRVmARTGKSLADEKSQREGLGCED 154
                                    36        46        56        66        76        86        96       106       116       126      |136       146        
                                                                                                                                    133-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4KT3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KT3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KT3)

(-) Gene Ontology  (4, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:89 - Pro A:90   [ RasMol ]  
 

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 Related Entries

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