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(-) Description

Title :  STRUCTURE OF AES FROM E. COLI IN COVALENT COMPLEX WITH PMS
 
Authors :  A. Schiefner, K. Gerber, A. Brosig, W. Boos
Date :  17 May 13  (Deposition) - 21 Aug 13  (Release) - 05 Feb 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Alpha/Beta-Hydrolase, Hormone-Sensitive-Lipase Family, Inhibition Of Malt, Acyl Esterase, Phenylmethylsulfonyl-Serine, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Schiefner, K. Gerber, A. Brosig, W. Boos
Structural And Mutational Analyses Of Aes, An Inhibitor Of Malt In Escherichia Coli.
Proteins V. 82 268 2014
PubMed-ID: 23934774  |  Reference-DOI: 10.1002/PROT.24383

(-) Compounds

Molecule 1 - ACETYL ESTERASE
    Chains: A, B, C, D, E, F
    EC Number: 3.1.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE31
    Expression System Strain: BRE 1162
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: AES, B0476, JW0465, YBAC
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K12
    Synonym: AES, ECE

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 20)

Asymmetric Unit (4, 20)
No.NameCountTypeFull Name
11PE2Ligand/IonPENTAETHYLENE GLYCOL
2IMD4Ligand/IonIMIDAZOLE
3PGE8Ligand/IonTRIETHYLENE GLYCOL
4SEB6Mod. Amino AcidO-BENZYLSULFONYL-SERINE
Biological Unit 1 (3, 7)
No.NameCountTypeFull Name
11PE-1Ligand/IonPENTAETHYLENE GLYCOL
2IMD2Ligand/IonIMIDAZOLE
3PGE3Ligand/IonTRIETHYLENE GLYCOL
4SEB2Mod. Amino AcidO-BENZYLSULFONYL-SERINE
Biological Unit 2 (4, 8)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2IMD2Ligand/IonIMIDAZOLE
3PGE3Ligand/IonTRIETHYLENE GLYCOL
4SEB2Mod. Amino AcidO-BENZYLSULFONYL-SERINE
Biological Unit 3 (3, 5)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2IMD-1Ligand/IonIMIDAZOLE
3PGE2Ligand/IonTRIETHYLENE GLYCOL
4SEB2Mod. Amino AcidO-BENZYLSULFONYL-SERINE

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:199 , LEU A:200 , ARG A:206 , LEU A:221 , GLN A:222 , GLU A:225 , TYR A:240BINDING SITE FOR RESIDUE PGE A 401
02AC2SOFTWAREALA A:62 , MET A:64 , GLU A:73 , ALA D:140 , CYS D:143 , TYR D:144 , GLN D:147BINDING SITE FOR RESIDUE PGE A 402
03AC3SOFTWARETYR A:239BINDING SITE FOR RESIDUE IMD A 403
04AC4SOFTWARELEU B:197 , GLY B:199 , LEU B:200 , ARG B:206 , GLU B:225 , TYR B:240BINDING SITE FOR RESIDUE PGE B 401
05AC5SOFTWARELYS B:302 , ASP B:305 , GLU B:306 , LYS C:302 , ASP C:305BINDING SITE FOR RESIDUE IMD B 402
06AC6SOFTWARELEU C:197 , GLY C:199 , LEU C:200 , ARG C:201 , ARG C:206 , LEU C:221 , GLU C:225 , TYR C:240 , ASP C:267BINDING SITE FOR RESIDUE PGE C 401
07AC7SOFTWARELEU D:197 , GLY D:199 , LEU D:200 , ARG D:201 , ARG D:206 , LEU D:221 , GLU D:225 , TYR D:240BINDING SITE FOR RESIDUE PGE D 401
08AC8SOFTWAREASP D:122 , TYR D:123 , THR D:124 , LEU D:125 , GLU D:128 , HOH D:566BINDING SITE FOR RESIDUE PGE D 402
09AC9SOFTWAREASN A:99 , ASP A:101 , TRP D:177 , LYS D:181 , TYR D:239 , HOH D:598BINDING SITE FOR RESIDUE 1PE D 403
10BC1SOFTWAREASN D:99 , ASP D:101 , HOH D:526BINDING SITE FOR RESIDUE IMD D 404
11BC2SOFTWARELYS D:302 , ASP D:305 , LYS E:302 , ASP E:305 , GLU E:306BINDING SITE FOR RESIDUE IMD D 405
12BC3SOFTWAREGLY E:199 , LEU E:200 , ARG E:206 , LEU E:221 , GLU E:225 , TYR E:240 , HOH E:534BINDING SITE FOR RESIDUE PGE E 401
13BC4SOFTWAREALA B:62 , MET B:64 , GLU B:73 , ALA E:140 , CYS E:143 , TYR E:144 , GLN E:147 , ILE E:183BINDING SITE FOR RESIDUE 1PE E 402
14BC5SOFTWARELEU F:197 , GLY F:199 , LEU F:200 , ARG F:206 , LEU F:221 , TYR F:240 , ASP F:267BINDING SITE FOR RESIDUE PGE F 401

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:143 -A:185
2B:143 -B:185
3C:143 -C:185
4D:143 -D:185
5E:143 -E:185
6F:143 -F:185

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Ser A:126 -Pro A:127
2Phe A:131 -Pro A:132
3Ser B:126 -Pro B:127
4Phe B:131 -Pro B:132
5Ser C:126 -Pro C:127
6Phe C:131 -Pro C:132
7Ser D:126 -Pro D:127
8Phe D:131 -Pro D:132
9Ser E:126 -Pro E:127
10Phe E:131 -Pro E:132
11Ser F:126 -Pro F:127
12Phe F:131 -Pro F:132

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KRY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KRY)

(-) Exons   (0, 0)

(no "Exon" information available for 4KRY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:318
                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhh......eeeeeee......eeeeeee.......eeeee............hhhhhhhhhhhhh.eeeee..........hhhhhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhhhhhhhhhhhh....eeeeeeee........hhhhhhh.......hhhhhhhhhhhhh.hhhhhhh...hhhhh........eeeeee....hhhhhhhhhhhhhhh...eeeeee.....hhhhhh..hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4kry A   2 KPENKLPVLDLISAEMKTVVNTLQPDLPPWPATGTIAEQRQYYTLERRFWNAGAPEMATRAYMVPTKYGQVETRLFCPQPDSPATLFYLHGGGFILGNLDTHDRIMRLLASYSQCTVIGIDYTLSPEARFPQAIEEIVAACCYFHQQAEDYQINMSRIGFAGDsAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGLRDSVTRRLLGGVWDGLTQQDLQMYEEAYLSNDADRESPYYCLFNNDLTREVPPCFIAGAEFDPLLDDSRLLYQTLAAHQQPCEFKLYPGTLHAFLHYSRMMKTADEALRDGAQFFTAQL 319
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161   |   171       181       191       201       211       221       231       241       251       261       271       281       291       301       311        
                                                                                                                                                                                             165-SEB                                                                                                                                                      


Chain B from PDB  Type:PROTEIN  Length:318
                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhh.hhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhh.....eeeeeee......eeeeeee.......eeeee............hhhhhhhhhhhhh.eeeee..........hhhhhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhhhhhhhhhhh.....eeeeeeee........hhhhhhh.......hhhhhhhhhhhhh.hhhhhhh...hhhhh........eeeeee....hhhhhhhhhhhhhhh...eeeeee.....hhhhhh..hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4kry B   2 KPENKLPVLDLISAEMKTVVNTLQPDLPPWPATGTIAEQRQYYTLERRFWNAGAPEMATRAYMVPTKYGQVETRLFCPQPDSPATLFYLHGGGFILGNLDTHDRIMRLLASYSQCTVIGIDYTLSPEARFPQAIEEIVAACCYFHQQAEDYQINMSRIGFAGDsAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGLRDSVTRRLLGGVWDGLTQQDLQMYEEAYLSNDADRESPYYCLFNNDLTREVPPCFIAGAEFDPLLDDSRLLYQTLAAHQQPCEFKLYPGTLHAFLHYSRMMKTADEALRDGAQFFTAQL 319
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161   |   171       181       191       201       211       221       231       241       251       261       271       281       291       301       311        
                                                                                                                                                                                             165-SEB                                                                                                                                                      


Chain C from PDB  Type:PROTEIN  Length:318
                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhh.......hhhhhhhhh.............hhhhhhhhhhhhhhhhhh.....eeeeeeeee..eeeeeeeee.......eeeee............hhhhhhhhhhhhh.eeeee..........hhhhhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhhhhhhhhhhh.....eeeeeeee........hhhhhhh.......hhhhhhhhhhhhh.hhhhhhh...hhhhh........eeeeee....hhhhhhhhhhhhhhh...eeeeee.....hhhhhh..hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4kry C   2 KPENKLPVLDLISAEMKTVVNTLQPDLPPWPATGTIAEQRQYYTLERRFWNAGAPEMATRAYMVPTKYGQVETRLFCPQPDSPATLFYLHGGGFILGNLDTHDRIMRLLASYSQCTVIGIDYTLSPEARFPQAIEEIVAACCYFHQQAEDYQINMSRIGFAGDsAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGLRDSVTRRLLGGVWDGLTQQDLQMYEEAYLSNDADRESPYYCLFNNDLTREVPPCFIAGAEFDPLLDDSRLLYQTLAAHQQPCEFKLYPGTLHAFLHYSRMMKTADEALRDGAQFFTAQL 319
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161   |   171       181       191       201       211       221       231       241       251       261       271       281       291       301       311        
                                                                                                                                                                                             165-SEB                                                                                                                                                      


Chain D from PDB  Type:PROTEIN  Length:318
                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhh.hhhhhhhhh.............hhhhhhhhhhhhhhhhhh.....eeeeeee......eeeeeee.......eeeee............hhhhhhhhhhhhh.eeeee..........hhhhhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhhhhhhhhhhh.....eeeeeeee........hhhhhhh.......hhhhhhhhhhhhh..hhhhhh...hhhhh........eeeeee....hhhhhhhhhhhhhhh...eeeeee.....hhhhhh..hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4kry D   2 KPENKLPVLDLISAEMKTVVNTLQPDLPPWPATGTIAEQRQYYTLERRFWNAGAPEMATRAYMVPTKYGQVETRLFCPQPDSPATLFYLHGGGFILGNLDTHDRIMRLLASYSQCTVIGIDYTLSPEARFPQAIEEIVAACCYFHQQAEDYQINMSRIGFAGDsAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGLRDSVTRRLLGGVWDGLTQQDLQMYEEAYLSNDADRESPYYCLFNNDLTREVPPCFIAGAEFDPLLDDSRLLYQTLAAHQQPCEFKLYPGTLHAFLHYSRMMKTADEALRDGAQFFTAQL 319
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161   |   171       181       191       201       211       221       231       241       251       261       271       281       291       301       311        
                                                                                                                                                                                             165-SEB                                                                                                                                                      


Chain E from PDB  Type:PROTEIN  Length:329
                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhh.hhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhh.....eeeeeee......eeeeeee.......eeeee............hhhhhhhhhhhhh.eeeee..........hhhhhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhhhhhhhhhhhh....eeeeeeee........hhhhhhh.......hhhhhhhhhhhhh.hhhhhhh...hhhhh........eeeeee....hhhhhhhhhhhhhhh...eeeeee.....hhhhhh..hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kry E  -9 HHHHHHTDPIMKPENKLPVLDLISAEMKTVVNTLQPDLPPWPATGTIAEQRQYYTLERRFWNAGAPEMATRAYMVPTKYGQVETRLFCPQPDSPATLFYLHGGGFILGNLDTHDRIMRLLASYSQCTVIGIDYTLSPEARFPQAIEEIVAACCYFHQQAEDYQINMSRIGFAGDsAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGLRDSVTRRLLGGVWDGLTQQDLQMYEEAYLSNDADRESPYYCLFNNDLTREVPPCFIAGAEFDPLLDDSRLLYQTLAAHQQPCEFKLYPGTLHAFLHYSRMMKTADEALRDGAQFFTAQL 319
                                     0        10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160    |  170       180       190       200       210       220       230       240       250       260       270       280       290       300       310         
                                                                                                                                                                                                        165-SEB                                                                                                                                                      


Chain F from PDB  Type:PROTEIN  Length:318
                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhh..hhhhhhh.............hhhhhhhhhhhhhhhhhh.....eeeeeeeee..eeeeeeeee.......eeeee............hhhhhhhhhhhhh.eeeee..........hhhhhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhhhhhhhhhhhh....eeeeeeee........hhhhhhhh......hhhhhhhhhhhhh.hhhhhhh...hhhhh........eeeeee....hhhhhhhhhhhhhhh...eeeeee.....hhhhh...hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4kry F   2 KPENKLPVLDLISAEMKTVVNTLQPDLPPWPATGTIAEQRQYYTLERRFWNAGAPEMATRAYMVPTKYGQVETRLFCPQPDSPATLFYLHGGGFILGNLDTHDRIMRLLASYSQCTVIGIDYTLSPEARFPQAIEEIVAACCYFHQQAEDYQINMSRIGFAGDsAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGLRDSVTRRLLGGVWDGLTQQDLQMYEEAYLSNDADRESPYYCLFNNDLTREVPPCFIAGAEFDPLLDDSRLLYQTLAAHQQPCEFKLYPGTLHAFLHYSRMMKTADEALRDGAQFFTAQL 319
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161   |   171       181       191       201       211       221       231       241       251       261       271       281       291       301       311        
                                                                                                                                                                                             165-SEB
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4KRY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KRY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KRY)

(-) Gene Ontology  (9, 9)

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  4kry
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  AES_ECOLI | P23872
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 Related Entries

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        AES_ECOLI | P23872: 4krx

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4krx