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(-) Description

Title :  2.8 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF D-HYDANTOINASE FROM BACILLUS SP. AR9 IN C2221 SPACE GROUP
 
Authors :  V. Kumar, K. V. R. Kishan
Date :  15 May 13  (Deposition) - 21 May 14  (Release) - 22 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Tim-Barrel, Hydantoinase, Binuclear Metal-Binding, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Kumar, K. V. R. Kishan
2. 8 Angstrom Resolution Crystal Structure Of D-Hydantoinase From Bacillus Sp. Ar9 In C2221 Space Group
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - D-HYDANTOINASE
    Chains: A, B
    EC Number: 3.5.2.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: D-HYDANTOINASE, UNP RESIDUES 2-461
    Mutation: YES
    Organism Scientific: BACILLUS SP. AR9
    Organism Taxid: 301298

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1MN4Ligand/IonMANGANESE (II) ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:150 , HIS A:183 , HIS A:239 , MN A:502BINDING SITE FOR RESIDUE MN A 501
2AC2SOFTWAREHIS A:58 , HIS A:60 , LYS A:150 , ASP A:315 , MN A:501BINDING SITE FOR RESIDUE MN A 502
3AC3SOFTWARELYS B:150 , HIS B:183 , HIS B:239 , MN B:502BINDING SITE FOR RESIDUE MN B 501
4AC4SOFTWAREHIS B:58 , HIS B:60 , LYS B:150 , ASP B:315 , MN B:501 , HOH B:601BINDING SITE FOR RESIDUE MN B 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KQN)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Ser A:288 -Pro A:289
2Phe A:379 -Pro A:380
3Ser B:288 -Pro B:289
4Phe B:379 -Pro B:380

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KQN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KQN)

(-) Exons   (0, 0)

(no "Exon" information available for 4KQN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:460
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..eee....eee.eeeee..eeeeee........eeee....eeee.eeeeee.............hhhhhhhhhhhh.eeeeeeee......hhhhhhhhhhhh.......eeeeeee....hhhhhhhhhhhhhh....eeeee.........hhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhhh.....hhhhhh..hhhhhhhhhhhhhhhhhhh..eee....hhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhh..hhhhhhhh.......hhhhhhhhhhhhh....ee...........hhhhhh.hhhhh........hhhhhhhhhh......hhhhhhhhhhhhhhhhh................eeeeeeeeeee..................eeeeeeeeeee..eeee....................... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kqn A   2 KKWIRGGTVVTAADTYQADVLIEGERVVAIGHQLAAAGAEEIDATGCYVIPGGIDPHTHLDMPFGGTVTADDFFTGTRAAAFGGTTSIVDFCLTKKGESLKSAIATWHEKARGKAVIDYGFHLMIAEANDQVLEELESVISSEGITSLKVFMAYKNVFQADDETLFKTLVKAKELGALVQVHAENGDVLDYLTKKALAEGNTDPIYHAYTRPPEAEGEATGRAIALTALAGSQLYVVHVSCASAVQRIAEAREKGWNVYGETCPQYLALDVSIMDQPDFEGAKYVWSPPLREKWNQEVLWSALKNGILQTVGSDHCPFNFRGQKELGRGDFTKIPNGGPLIEDRLTILYSEGVRQGRISLNQFVDISSTKAAKLFGMFPRKGTIAVGSDADIVIFDPHVKRTLSVETHHMNVDYNPFEGMEVYGEVVSVLSRGSFVVRDKQFVGQAGSGQYIKRTTFEQA 461
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461


Chain B from PDB  Type:PROTEIN  Length:456
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee..eee....eee.eeeee..eeeeee....eeee....eeee.eeeeee....ee..ee...hhhhhhhhhhhh.eeeeeeee......hhhhhhhhhhhhhh.....eeeeeee....hhhhhhhhhhhhhh....eeeee.........hhhhhhhhhhhhhhhh.eeeee..hhhhhhhhhhhhhhh.....hhhhhh..hhhhhhhhhhhhhhhhhhh..eee....hhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhh...hhhhhhh.......hhhhhhhhhhhhh....ee...........hhhhhh.hhhhh........hhhhhhhhhh......hhhhhhhhhhhhhhhhh................eeeeeeeeeee..................eeeeeeeeeee..eeee....................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4kqn B   2 KKWIRGGTVVTAADTYQADVLIEGERVVAIGHQGAEEIDATGCYVIPGGIDPHTHLDMPFGGTVTADDFFTGTRAAAFGGTTSIVDFCLTKKGESLKSAIATWHEKARGKAVIDYGFHLMIAEANDQVLEELESVISSEGITSLKVFMAYKNVFQADDETLFKTLVKAKELGALVQVHAENGDVLDYLTKKALAEGNTDPIYHAYTRPPEAEGEATGRAIALTALAGSQLYVVHVSCASAVQRIAEAREKGWNVYGETCPQYLALDVSIMDQPDFEGAKYVWSPPLREKWNQEVLWSALKNGILQTVGSDHCPFNFRGQKELGRGDFTKIPNGGPLIEDRLTILYSEGVRQGRISLNQFVDISSTKAAKLFGMFPRKGTIAVGSDADIVIFDPHVKRTLSVETHHMNVDYNPFEGMEVYGEVVSVLSRGSFVVRDKQFVGQAGSGQYIKRTTFEQA 461
                                    11        21        31  ||    45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455      
                                                           34|                                                                                                                                                                                                                                                                                                                                                                                                                                      
                                                            39
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4KQN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KQN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KQN)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q5DLU2_9BACI | Q5DLU2: 1yny 4kir

(-) Related Entries Specified in the PDB File

1yny