4KNM - JenaLib

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Title :   CRYSTAL STRUCTURE OF HUMAN CARBONIC ANHYDRASE ISOZYME XIII WITH 2-CHLORO-4-{[(4,6-DIMETHYLPYRIMIDIN-2-YL) SULFANYL]ACETYL}BENZENESULFONAMIDE

Authors :   A. Smirnov, E. Manakova, S. Grazulis

Date :   10 May 13 (Deposition) - 06 Nov 13 (Release) - 06 Nov 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Drug Design, Carbonic Anhydrase, Benzenesulfonamide, Metal-Binding, Lyase-Lyase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Capkauskaite, A. Zubriene, A. Smirnov, J. Torresan, M. Kisonaite, J. Kazokaite, J. Gylyte, V. Michailoviene, V. Jogaite, E. Manakova, S. Grazulis, S. Tumkevicius, D. Matulis
Benzenesulfonamides With Pyrimidine Moiety As Inhibitors Of Human Carbonic Anhydrases I, Ii, Vi, Vii, Xii, And Xiii
Bioorg. Med. Chem. V. 21 6937 2013
PubMed-ID: 24103428 | Reference-DOI: 10.1016/J.BMC.2013.09.029

Molecule 1 - CARBONIC ANHYDRASE 13
	Chains	:	A, B
	EC Number	:	4.2.1.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET15B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	CA13
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	CARBONATE DEHYDRATASE XIII, CARBONIC ANHYDRASE XIII, CA- XIII

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 5)

No.	Name	Count	Type	Full Name
1	E1E	2	Ligand/Ion	2-CHLORO-4-{[(4,6-DIMETHYLPYRIMIDIN-2-YL)SULFANYL]ACETYL}BENZENESULFONAMIDE
2	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL
3	ZN	2	Ligand/Ion	ZINC ION

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	E1E	1	Ligand/Ion	2-CHLORO-4-{[(4,6-DIMETHYLPYRIMIDIN-2-YL)SULFANYL]ACETYL}BENZENESULFONAMIDE
2	PGE	1	Ligand/Ion	TRIETHYLENE GLYCOL
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	E1E	1	Ligand/Ion	2-CHLORO-4-{[(4,6-DIMETHYLPYRIMIDIN-2-YL)SULFANYL]ACETYL}BENZENESULFONAMIDE
2	PGE	-1	Ligand/Ion	TRIETHYLENE GLYCOL
3	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:96 , HIS A:98 , HIS A:121 , E1E A:302	BINDING SITE FOR RESIDUE ZN A 301
2	AC2	SOFTWARE	HIS A:96 , HIS A:98 , HIS A:121 , PHE A:133 , VAL A:134 , VAL A:145 , LEU A:200 , THR A:201 , VAL A:202 , TRP A:211 , ZN A:301 , HOH A:552	BINDING SITE FOR RESIDUE E1E A 302
3	AC3	SOFTWARE	LEU A:46 , ARG A:47 , PRO A:48 , ASP A:192 , SER A:261 , HOH A:440 , HOH A:482 , PRO B:48 , HOH B:403 , HOH B:482	BINDING SITE FOR RESIDUE PGE A 303
4	AC4	SOFTWARE	HIS B:96 , HIS B:98 , HIS B:121 , E1E B:302	BINDING SITE FOR RESIDUE ZN B 301
5	AC5	SOFTWARE	HIS B:96 , HIS B:98 , HIS B:121 , PHE B:133 , VAL B:134 , VAL B:145 , LEU B:200 , THR B:201 , VAL B:202 , TRP B:211 , ZN B:301 , HOH B:472	BINDING SITE FOR RESIDUE E1E B 302

(no "SS Bond" information available for 4KNM)

Asymmetric Unit

No.	Residues
1	Ser A:31	-	Pro A:32
2	Pro A:203	-	Pro A:204
3	Ser B:31	-	Pro B:32
4	Pro B:203	-	Pro B:204

(no "SAP(SNP)/Variant" information available for 4KNM)

(no "PROSITE Motif" information available for 4KNM)

(no "Exon" information available for 4KNM)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:259
                                                                                                                                                                                                                                                                                                   
               SCOP domains d4knma_ A: automated matches                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhhh......eehhhhhee......eeee.hhh.eeeeee....eeeee.......eeee......eeeeeeeeee..........ee......eeeeeeeee.....hhhhhh.....eeeeeeeeee...hhhhhhhhhhhhhhh....eee....hhhhhh.....eeeeee..........eeeeee...eeehhhhhhhhh.............................ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4knm A   5 LSWGYREHNGPIHWKEFFPIADGDQQSPIEIKTKEVKYDSSLRPLSIKYDPSSAKIISNSGHSFNVDFDDTENKSVLRGGPLTGSYRLRQVHLHWGSADDHGSEHIVDGVSYAAELHVVHWNSDKYPSFVEAAHEPDGLAVLGVFLQIGEPNSQLQKITDTLDSIKEKGKQTRFTNFDLLSLLPPSWDYWTYPGSLTVPPLLESVTWIVLKQPINISSQQLAKFRSLLCTAEGEAAAFLVSNHRPPQPLKGRKVRASFH 263
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254

Chain B from PDB  Type:PROTEIN  Length:258
                                                                                                                                                                                                                                                                                                  
               SCOP domains d4knmb_ B: automated matches                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhh......eehhhhhee......eeee.....eeeeee....eeeee.......eeee......eeeeeeeeee..........ee......eeeeeeeee.....hhhhhh.....eeeeeeeeee...hhhhhhhhh..........eee....hhhhhh.....eeeeee..........eeeeee...eeehhhhhhhhh.............................ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4knm B   6 SWGYREHNGPIHWKEFFPIADGDQQSPIEIKTKEVKYDSSLRPLSIKYDPSSAKIISNSGHSFNVDFDDTENKSVLRGGPLTGSYRLRQVHLHWGSADDHGSEHIVDGVSYAAELHVVHWNSDKYPSFVEAAHEPDGLAVLGVFLQIGEPNSQLQKITDTLDSIKEKGKQTRFTNFDLLSLLPPSWDYWTYPGSLTVPPLLESVTWIVLKQPINISSQQLAKFRSLLCTAEGEAAAFLVSNHRPPQPLKGRKVRASFH 263
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Carbonic anhydrase (525)

Superfamily: Carbonic anhydrase (525)

Family: Carbonic anhydrase (513)

Protein domain: automated matches (14)

Human (Homo sapiens) [TaxId: 9606] (14)

1a	d4knma_	A:
1b	d4knmb_	B:

(no "CATH Domain" information available for 4KNM)

(no "Pfam Domain" information available for 4KNM)

Asymmetric Unit(hide GO term definitions)

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	Cis Peptide Bonds
		Pro A:203 - Pro A:204	[ RasMol ]
		Pro B:203 - Pro B:204	[ RasMol ]
		Ser A:31 - Pro A:32	[ RasMol ]
		Ser B:31 - Pro B:32	[ RasMol ]

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	4knm
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	CAH13_HUMAN \| Q8N1Q1	:	3czv 3d0n 3da2 4hu1 4knn 4qiz 4qjp 4qjx 4qsj 5e2n

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Ligands, Modified Residues, Ions (3, 5)

Sites (5, 5)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

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