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(-) Description

Title :  E. COLI ALKALINE PHOSPHATASE MUTANT S102G/R166S IN COMPLEX WITH INORGANIC PHOSPHATE
 
Authors :  L. D. Andrews, T. D. Fenn, D. Herschlag
Date :  08 May 13  (Deposition) - 24 Jul 13  (Release) - 24 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Phosphate Monoester Hydrolase, Periplasmic, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. D. Andrews, T. D. Fenn, D. Herschlag
Ground State Destabilization By Anionic Nucleophiles Contributes To The Activity Of Phosphoryl Transfer Enzymes.
Plos Biol. V. 11 01599 2013
PubMed-ID: 23843744  |  Reference-DOI: 10.1371/JOURNAL.PBIO.1001599

(-) Compounds

Molecule 1 - ALKALINE PHOSPHATASE
    Chains: A, B
    EC Number: 3.1.3.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: PHOA, B0383, JW0374
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K12
    Synonym: APASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 8)

Asymmetric/Biological Unit (2, 8)
No.NameCountTypeFull Name
1PO42Ligand/IonPHOSPHATE ION
2ZN6Ligand/IonZINC ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:51 , GLY A:102 , ASP A:153 , ASP A:327 , LYS A:328 , HIS A:331 , ASP A:369 , HIS A:370 , HIS A:412 , ZN A:502 , ZN A:503 , ZN A:504BINDING SITE FOR RESIDUE PO4 A 501
2AC2SOFTWAREASP A:51 , ASP A:327 , ASP A:369 , HIS A:370 , PO4 A:501BINDING SITE FOR RESIDUE ZN A 502
3AC3SOFTWAREASP A:327 , HIS A:331 , HIS A:412 , PO4 A:501BINDING SITE FOR RESIDUE ZN A 503
4AC4SOFTWAREASP A:51 , ASP A:153 , THR A:155 , GLU A:322 , PO4 A:501BINDING SITE FOR RESIDUE ZN A 504
5AC5SOFTWAREASP B:51 , GLY B:102 , ASP B:153 , ASP B:327 , LYS B:328 , HIS B:331 , ASP B:369 , HIS B:370 , HIS B:412 , ZN B:502 , ZN B:503BINDING SITE FOR RESIDUE PO4 B 501
6AC6SOFTWAREASP B:51 , ASP B:327 , ASP B:369 , HIS B:370 , PO4 B:501BINDING SITE FOR RESIDUE ZN B 502
7AC7SOFTWAREASP B:327 , HIS B:331 , HIS B:412 , PO4 B:501BINDING SITE FOR RESIDUE ZN B 503
8AC8SOFTWAREASP B:51 , ASP B:153 , THR B:155 , GLU B:322BINDING SITE FOR RESIDUE ZN B 504

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:168 -A:178
2A:286 -A:336
3B:168 -B:178
4B:286 -B:336

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4KM4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KM4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KM4)

(-) Exons   (0, 0)

(no "Exon" information available for 4KM4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:445
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d4km4a_ A: Alkaline phosphatase                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........................hhhhhhh........eeeeeee...hhhhhhhhhhhhh.............eeeeee..ee......ee...hhhhhhhhhhhh..................hhhhhhhhh..eeeeeeeee..hhhhhh...........hhhhhhhhh...hhhhh...hhhhhhhhhh..eeeeehhhhhhh..........hhhhhhhhh..eee.hhhhhhhh........eeee.........ee.................ee.........hhhhhhhhhhhhhh.....eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee......eee........eeeeee.....eeeeee..............eeeeee..hhhhhheeeehhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4km4 A   4 MPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDGAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSSKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGL 448
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443     


Chain B from PDB  Type:PROTEIN  Length:445
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains d4km4b_ B: Alkaline phosphatase                                                                                                                                                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........................hhhhhhh........eeeeeee...hhhhhhhhhhhhh.............eeeeee..ee......ee...hhhhhhhhhhhh..................hhhhhhhhh..eeeeeeeee..hhhhhh...........hhhhhhhhh...hhhhh...hhhhhhhhhh..eeeeehhhhhhh..........hhhhhhhhh..eee.hhhhhhhh........eeee.........ee....eehhhhhh.....ee.........hhhhhhhhhhhhhh.....eeeeeeehhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee......eee........eeeeee.....eeeeee..............eeeeee..hhhhhheeeehhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4km4 B   4 MPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDGAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSSKCYGPSATSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDEAVQRALEFAKKEGNTLVIVTADHAHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGL 448
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KM4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KM4)

(-) Gene Ontology  (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PPB_ECOLI | P00634: 1aja 1ajb 1ajc 1ajd 1alh 1ali 1alj 1alk 1ani 1anj 1b8j 1ed8 1ed9 1elx 1ely 1elz 1ew8 1ew9 1hjk 1hqa 1kh4 1kh5 1kh7 1kh9 1khj 1khk 1khl 1khn 1ura 1urb 1y6v 1y7a 2anh 2g9y 2ga3 2mlx 2mly 2mlz 3bdf 3bdg 3bdh 3cmr 3dpc 3dyc 3tg0 4yr1 5c66 5gad 5gaf 5gag 5gah 5jtl 5jtm 5jtn 5jto 5jtp

(-) Related Entries Specified in the PDB File

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