4KHB - JenaLib

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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

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Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   STRUCTURE OF THE SPT16D POB3N HETERODIMER

Authors :   T. Stuwe, E. Zhang, A. G. Ladurner

Date :   30 Apr 13 (Deposition) - 29 May 13 (Release) - 17 Jul 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: E,F  (1x)
Biol. Unit 4: G,H  (1x)

Keywords :   Ph Like Domains, Transcription-Replication Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Hondele, T. Stuwe, M. Hassler, F. Halbach, A. Bowman, E. T. Zhang, B. Nijmeijer, C. Kotthoff, V. Rybin, S. Amlacher, E. Hurt, A. G. Ladurner
Structural Basis Of Histone H2A-H2B Recognition By The Essential Chaperone Fact.
Nature V. 499 111 2013
PubMed-ID: 23698368 | Reference-DOI: 10.1038/NATURE12242

Molecule 1 - UNCHARACTERIZED PROTEIN SPT16D
	Chains	:	A, G, E, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	UNP RESIDUES 522-647
	Gene	:	CTHT_0052370, SPT16
	Organism Scientific	:	CHAETOMIUM THERMOPHILUM VAR. THERMOPHILUM
	Organism Taxid	:	759272
	Strain	:	DSM 1495 / CBS 144.50 / IMI 039719

Molecule 2 - UNCHARACTERIZED PROTEIN POB3N
	Chains	:	D, F, H, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	UNP RESIDUES 1-192
	Gene	:	CTHT_0070340, POB3
	Organism Scientific	:	CHAETOMIUM THERMOPHILUM VAR. THERMOPHILUM
	Organism Taxid	:	759272
	Strain	:	DSM 1495 / CBS 144.50 / IMI 039719

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:					E	F
Biological Unit 4 (1x)	:							G	H

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 9)

No.	Name	Count	Type	Full Name
1	SO4	9	Ligand/Ion	SULFATE ION

Biological Unit 1 (1, 3)

No.	Name	Count	Type	Full Name
1	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 2 (1, 3)

No.	Name	Count	Type	Full Name
1	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 3 (1, 2)

No.	Name	Count	Type	Full Name
1	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	SO4	1	Ligand/Ion	SULFATE ION

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HOH A:816 , ARG E:534 , ASP E:535 , ASN E:536 , ARG F:53	BINDING SITE FOR RESIDUE SO4 A 701
2	AC2	SOFTWARE	ARG D:124 , HOH D:318 , HOH D:326 , SER H:101 , LEU H:102 , ARG H:103 , ARG H:124	BINDING SITE FOR RESIDUE SO4 D 201
3	AC3	SOFTWARE	HOH C:805 , SER D:101 , LEU D:102 , ARG D:103 , ARG D:124 , HOH D:315 , ARG H:124	BINDING SITE FOR RESIDUE SO4 D 202
4	AC4	SOFTWARE	ARG F:22 , LYS F:31	BINDING SITE FOR RESIDUE SO4 F 201
5	AC5	SOFTWARE	HIS H:0 , MET H:1 , ASN H:89	BINDING SITE FOR RESIDUE SO4 H 201
6	AC6	SOFTWARE	ASN E:554 , HIS E:568	BINDING SITE FOR RESIDUE SO4 E 701
7	AC7	SOFTWARE	ARG G:534 , ASP G:535 , ASN G:536 , ARG H:53	BINDING SITE FOR RESIDUE SO4 C 701
8	AC8	SOFTWARE	SER B:101 , LEU B:102 , ARG B:103 , ARG B:124 , HOH B:336 , HOH B:339 , ARG F:124	BINDING SITE FOR RESIDUE SO4 B 201
9	AC9	SOFTWARE	LYS A:533 , ARG B:124 , HOH B:306 , HOH E:807 , SER F:101 , LEU F:102 , ARG F:103 , ARG F:124	BINDING SITE FOR RESIDUE SO4 B 202

(no "SS Bond" information available for 4KHB)

Asymmetric Unit

No.	Residues
1	Lys A:600	-	Asp A:601
2	Asp A:601	-	Asp A:602
3	Val D:33	-	Gly D:34
4	Pro F:183	-	Gly F:184
5	Gly F:184	-	Thr F:185
6	Gly H:34	-	Gly H:35
7	Arg B:142	-	Asn B:143

(no "SAP(SNP)/Variant" information available for 4KHB)

(no "PROSITE Motif" information available for 4KHB)

(no "Exon" information available for 4KHB)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:113
                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhh..eeehhh.eeeeee..eeeeee...eeeeeeeee..eeeeeeee.................eeeeeeeeee.hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------- Transcript
                 4khb A 527 KRFESYKRDNQLPPKVRDMGIVIDQKNNTIVLPIMGRPVPFHINTIKNASKSDEGEWSFLRINFLSPGQRKDDQPFEDASAHFVRSLTFRSTDGDRYAEIANQISNLKREAVK 642
                                   536       546       556       566       576       586       599       609       619       629       639   
                                                                                              595|                                           
                                                                                               599

Chain B from PDB  Type:PROTEIN  Length:176
                                                                                                                                                                                                                
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeee......eeeeee..eeeeee......eeee.hhh.eeeeee...eeeeee.....eeeeeeehhhhhhhhhhhhhhh....eee.........eeeeee...eeeeee..eeeeeee...eeeeeeee..eeeeee...............eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4khb B   1 MAAIESFDHIYLDLSKEPGKCRFAENGLGWKPVGGGETFTLDVSNIGGAQWSRAAGYEVKILQRTSGVIQLDGFQQEDYERLAKIFKNWYSTNLENKEHSLRGWNWGKAEFGKAELTFNVQNRPAFEIPYSEIANTNLAGRNEIAVEFAPGQVKSKKASASRDQLVEIRFYIPGTT 185
                                    10        20        30        40        50    ||  61        71        81        91       101       111       121       131       141       151||     169       179      
                                                                                 55|                                                                                            152|                        
                                                                                  57                                                                                             161

Chain C from PDB  Type:PROTEIN  Length:106
                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhh..eeehhh.eeeeee..eeeeee...eeeeeeeee..eeeeeeee............eeeeeeeeee.hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 4khb C 526 FKRFESYKRDNQLPPKVRDMGIVIDQKNNTIVLPIMGRPVPFHINTIKNASKSDEGEWSFLRINFLSPGQPFEDASAHFVRSLTFRSTDGDRYAEIANQISNLKRE 639
                                   535       545       555       565       575       585       603       613       623       633      
                                                                                              594|                                    
                                                                                               603

Chain D from PDB  Type:PROTEIN  Length:170
                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeee......eeeeee..eeeee....eeee...eeeeeeee...eeeeeee....eeeeeeehhhhhhhhhhhhhhh....eee.........eeeeee...eeeeee..eeeeeee.hhh.eeee...eeeee...............eeeeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4khb D   0 HMAAIESFDHIYLDLSKEPGKCRFAENGLGWKPVGTFTLDVSNIGGAQWSRAAGYEVKILQRTSGVIQLDGFQQEDYERLAKIFKNWYSTNLENKEHSLRGWNWGKAEFGKAELTFNVQNRPAFEIPYSEIANTNLAGNEIAVEFAPGDKSKKASASRDQLVEIRFYIPG 184
                                     9        19        29    ||  42        52  ||    63        73        83        93       103       113       123       133       144       164       174       184
                                                             34|               55|                                                                                 141|       153|                    
                                                              38                57                                                                                  143        164

Chain E from PDB  Type:PROTEIN  Length:106
                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhh..eeehhh.eeeeee..eeeeee...eeeeeeeee..eeeeeeee.............eeeeeeeeee.hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 4khb E 526 FKRFESYKRDNQLPPKVRDMGIVIDQKNNTIVLPIMGRPVPFHINTIKNASKSDEGEWSFLRINFLSPGQGPFEDASAHFVRSLTFRSTDGDRYAEIANQISNLKR 638
                                   535       545       555       565       575       585       595||     612       622       632      
                                                                                                596|                                  
                                                                                                 604

Chain F from PDB  Type:PROTEIN  Length:173
                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee........eeeeee..eeeeee.....eeee.hhh.eeeeee...eeeeee.....eeeeeeehhhhhhhhhhhhhhh....eee.........eeeeee...eeeeee..eeeeeee.hhh.eeee....eeee..............eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4khb F   0 HMAAIESFDHIYLDLSKEPGKCRFAENGLGWKPVGGETFTLDVSNIGGAQWSRAAGYEVKILQRTSGVIQLDGFQQEDYERLAKIFKNWYSTNLENKEHSLRGWNWGKAEFGKAELTFNVQNRPAFEIPYSEIANTNLAGREIAVEFAPGDSKKASASRDQLVEIRFYIPGTT 186
                                     9        19        29    ||  40        50    ||  61        71        81        91       101       111       121       131       141||     152||     173       183   
                                                             34|                 55|                                                                                  142|      153|                     
                                                              36                  57                                                                                   144       165

Chain G from PDB  Type:PROTEIN  Length:106
                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhh..eeehhh.eeeeee..eeeeee...eeeeeeeee..eeeeeeee...........eeeeeeeeee.hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 4khb G 527 KRFESYKRDNQLPPKVRDMGIVIDQKNNTIVLPIMGRPVPFHINTIKNASKSDEGEWSFLRINFLSPGQFEDASAHFVRSLTFRSTDGDRYAEIANQISNLKREAV 641
                                   536       546       556       566       576       586       605       615       625       635      
                                                                                              595|                                    
                                                                                               605

Chain H from PDB  Type:PROTEIN  Length:168
                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeeeeeee......eeeeee..eeeee.....eeee...eeeeeeee...eeeeeee....eeeeeeehhhhhhhhhhhhhhh....eee.........eeeeee...eeeeee..eeeeeee...eeeeee..eeeeee...........eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4khb H   0 HMAAIESFDHIYLDLSKEPGKCRFAENGLGWKPVGGTFTLDVSNIGGAQWSRAAGYEVKILQRTSGVIQLDGFQQEDYERLAKIFKNWYSTNLENKEHSLRGWNWGKAEFGKAELTFNVQNRPAFEIPYSEIANTNLANEIAVEFAKSKKASASRDQLVEIRFYIPGT 185
                                     9        19        29     || 41        51   ||   62        72        82        92       102       112       122       132       144     ||167       177        
                                                              35|               55|                                                                                140|    150|                     
                                                               38                57                                                                                 143     164

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4KHB)

(no "CATH Domain" information available for 4KHB)

(no "Pfam Domain" information available for 4KHB)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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		SO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

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	Cis Peptide Bonds
		Arg B:142 - Asn B:143	[ RasMol ]
		Asp A:601 - Asp A:602	[ RasMol ]
		Gly F:184 - Thr F:185	[ RasMol ]
		Gly H:34 - Gly H:35	[ RasMol ]
		Lys A:600 - Asp A:601	[ RasMol ]
		Pro F:183 - Gly F:184	[ RasMol ]
		Val D:33 - Gly D:34	[ RasMol ]

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		Biological Unit 4	[ Jena3D ]

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	4khb
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	G0SDN1_CHATD \| G0SDN1	:	4kha 4kho

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 9)

Sites (9, 9)

SS Bonds (0, 0)

Cis Peptide Bonds (7, 7)

Sequence-Structure Mapping

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