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(-) Description

Title :  CRYSTAL STRUCTURE OF A DUF4785 FAMILY PROTEIN (LPG0956) FROM LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA STR. PHILADELPHIA 1 AT 2.00 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  30 Apr 13  (Deposition) - 03 Jul 13  (Release) - 24 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Three Domains Protein, Pf16024 Family, Duf4785, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-Biology, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Hypothetical Protein (Lpg0956) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1 At 2. 00 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: PB1
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: LPG0956, YP_094990.1
    Organism Scientific: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA
    Organism Taxid: 272624
    Strain: PHILADELPHIA 1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 11)

Asymmetric Unit (4, 11)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2CA3Ligand/IonCALCIUM ION
3MSE6Mod. Amino AcidSELENOMETHIONINE
4PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
11PE-1Ligand/IonPENTAETHYLENE GLYCOL
2CA-1Ligand/IonCALCIUM ION
3MSE3Mod. Amino AcidSELENOMETHIONINE
4PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 2 (3, 5)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2CA-1Ligand/IonCALCIUM ION
3MSE3Mod. Amino AcidSELENOMETHIONINE
4PEG1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:214 , HOH A:533 , HOH B:693BINDING SITE FOR RESIDUE CA A 401
2AC2SOFTWARELYS A:46 , ASP B:45 , HOH B:620 , HOH B:697 , HOH B:698 , HOH B:720BINDING SITE FOR RESIDUE CA B 501
3AC3SOFTWAREASP B:214 , HOH B:631 , HOH B:702 , HOH B:703BINDING SITE FOR RESIDUE CA B 502
4AC4SOFTWAREARG A:63 , TYR A:181 , LEU B:122 , ASP B:126BINDING SITE FOR RESIDUE PEG B 503
5AC5SOFTWARETYR A:123 , ARG B:62 , SER B:64 , TYR B:67 , LYS B:68 , SER B:172 , VAL B:173 , SER B:274 , GLY B:275 , HIS B:276 , THR B:277 , HOH B:603BINDING SITE FOR RESIDUE 1PE B 504

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:32 -A:35
2B:32 -B:35

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Lys A:297 -Pro A:298
2Lys B:297 -Pro B:298

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KH9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KH9)

(-) Exons   (0, 0)

(no "Exon" information available for 4KH9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:361
                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee............hhhhh....eeeee.........eee.eeeeeeehhhhhhheeee......eeeeee........eeee.....eee.hhhhhhhhhh..............eeee.hhhhh..eeeeee.........eeeeeee......eeeeee...eee...eeeeeeeee.........eeeeeee.....eee.eeeeee..eeeeeee...........eeeeeeeeeee..eeeeeeeeeeeeee...eeeeeeeeee...eeeeeeeee...eeeeeeeeeee....eeeeeeeeeeee..eeeeeeeee...hhhh.eeeeeeeee....eeeeee...ee.hhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kh9 A   0 GFTLPRQPTKAYECENCSQLSRENLHDKWEITNNISNVRRSYGYKERISLEQLQRGVIISTLAPGAVVRITPLQNKSIPELLIKTPKNQLLPLKEASSLYNQDDEVGNNPLAITKHQAmLQIKPELGYGKFILKSKDITNKYADAYmISVLDKFSITYLEVETDSLHYQYGDKLKATISLHNDITEYDVNDVDARLVGPKGQVISLNLTKLKSNVFEGTATLDSELNDRGENWYLETDVQTEYGQEIIRRSGHTAFSYSIPSASLmNVKKLSSKPLTFVVTVDVATASRYALQSVLFQKGEARPIQTSQRAQWLEPGKHVLQFTFDNLSDDNLYLGYLRLIDYGQLKTVYQYNQPVKLSQL 390
                            ||      28        38        48  ||    63        73        83        93       103       113       123       133       143       153       163      |173       183       193       203       213       223       233       243       253       263       273       283     | 293       303       313       326       336       346      |359       369       379       389 
                            ||                             51|                                                                                  142-MSE                     170-MSE                                                                                                                289-MSE                         321|                         353|                                 
                            0|                              57                                                                                                                                                                                                                                                                      325                          357                                 
                            20                                                                                                                                                                                                                                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:360
                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .ee............hhhhh....eeeeee...eeee.eeeeeeehhhhhhheeee......eeeeee........eeee.....eee.hhhhhhhhhh..............eeee.hhhhh..eeeeee.........eeeeeee......eeeeee...eee...eeeeeeeee.........eeeeeee.....eee.eeeeee..eeeeeee...........eeeeeeeeeee..eeeeeeeeeeeeee...eeeeeeeeee...eeeeeeeee...eeeeeeeeeeee...eeeeeeeeeeeee..eeeeeeeee......hhh.eeeeeeeeee....eeeeee...ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4kh9 B   0 GFTLPRQPTKAYECENCSQLSRENLHDKWEISNVRRSYGYKERISLEQLQRGVIISTLAPGAVVRITPLQNKSIPELLIKTPKNQLLPLKEASSLYNQDDEVGNNPLAITKHQAmLQIKPELGYGKFILKSKDITNKYADAYmISVLDKFSITYLEVETDSLHYQYGDKLKATISLHNDITEYDVNDVDARLVGPKGQVISLNLTKLKSNVFEGTATLDSELNDRGENWYLETDVQTEYGQEIIRRSGHTAFSYSIPSASLmNVKKLSSKPLTFVVTVDVATASRYALQSVLFQKNGEARPIQTSQRAQWLEPGKHVLQFTFDNHNQLSDDNLYLGYLRLIDYGQLKTVYQYNQPVKLSQ 389
                            ||      28        38        48||      67        77        87        97       107       117       127       137    |  147       157       167  |    177       187       197       207       217       227       237       247       257       267       277       287 |     297       307       317     ||329       339       349       359       369       379       389
                            0|                           49|                                                                                142-MSE                     170-MSE                                                                                                                289-MSE                           323|                                                               
                            20                            59                                                                                                                                                                                                                                                                      326
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4KH9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KH9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KH9)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4KH9)

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