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(-) Description

Title :  STRUCTURE OF SUCCINYL-COA: 3-KETOACID COA TRANSFERASE FROM DROSOPHILA MELANOGASTER
 
Authors :  Y. C. Wang, Z. B. Shi, M. Zhang
Date :  29 Apr 13  (Deposition) - 23 Oct 13  (Release) - 23 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.64
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Protein Fold, Ketone Body Catabolic Process, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Zhang, H. Y. Xu, Y. C. Wang, Z. B. Shi, N. N. Zhang
Structure Of Succinyl-Coa:3-Ketoacid Coa Transferase From Drosophila Melanogaster.
Acta Crystallogr. , Sect. F V. 69 1089 2013
PubMed-ID: 24100554  |  Reference-DOI: 10.1107/S1744309113024986

(-) Compounds

Molecule 1
    Chains: A, B
    EC Number: 2.8.3.5
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: HT-PET28A
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 34-516
    Gene: CG1140, DMEL_CG1140
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER
    Organism Taxid: 7227

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPRO B:429 , GLY B:430BINDING SITE FOR RESIDUE SO4 B 601

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KGB)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric/Biological Unit
No.Residues
1Gly A:172 -Lys A:173
2Lys A:331 -Gly A:332
3Val A:416 -Lys A:417
4Gly A:420 -Gly A:421
5Gly B:172 -Lys B:173
6Pro B:291 -Asn B:292
7Gly B:444 -Ser B:445

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KGB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KGB)

(-) Exons   (0, 0)

(no "Exon" information available for 4KGB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:466
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains d4kgba1 A:34-278 automated matches                                                                                                                                                                                                                   --------d4kgba2 A:297-515 automated matches                                                                                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee..hhhhhh.......eeee........hhhhhhhhhhhh...eeee..........hhhhhhh..eeeeee.....hhhhhhhhhh...eeee.hhhhhhhhhhhhhh...eeee.....hhhhhh..eeee.....eeee.....eeee..eeeeeee...eeeeeee..ee.....ee.hhhhhhhhhhhh..eeeeeeee.ee.............hhhhh.eeee.................hhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhh.....eeeee...eeee....hhhhh.............eeeeeee.hhhhhhhhhhh....eeee...eee....ee.......hhhhhhhh...eeeee...ee...ee.ee......eee.....eee...eeeeee...eeeeeee....hhhhhhhh.....eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kgb A  34 GKIYESAIDAVADVQDGAQILFGGFGICGIPEKMINALKQKGVKNITGVSNNGGVDDTGLGVLIKQKQVSKVIGSYVGENTELVRQYLEGELAVELTPQGTLAEKIRAGGAGIPAFYTPTGYATLVQEGGAPIKYSKDGKVEISSEKKPVKEFNGKNYVMEESIFADFAFVKAQKADPLGNLVFNKAARNFNAPMCRAAKITVAEVEEIVPIGALSPDEIHVPGIYINRIFKGTNYNKRVERLRITEPNPAQVLRERIARRVALEFHDGMYANLGIGIPVLSSNYIPKGMNVMLQSENGILGLGPFPTKDKVDPDLINAGKESVTVVPGASYFGSDDSFAMIRGGHVDITILGAMEVSATGDLANWMVKMGGAMDLVAAPGTKVIITMEHNARDGSPKILDTCSLPLTGKGVIDMIISEKAVFTVEKGVGLTLIEVAEGYTVDDIIASTGAKFTVSPNLKKMGQIP 515
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       293       303       313       323       333       343       353       363       373       383       393       403      |419       429       439       449       459       469       479       489       499       509      
                                                                                                                                                                                                                                                                                 281|                                                                                                                   410|||                                                                                                
                                                                                                                                                                                                                                                                                  292                                                                                                                    416||                                                                                                
                                                                                                                                                                                                                                                                                                                                                                                                          417|                                                                                                
                                                                                                                                                                                                                                                                                                                                                                                                           419                                                                                                


Chain B from PDB  Type:PROTEIN  Length:464
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains d4kgbb1 B:34-278 automated matches                                                                                                                                                                                                                 -------d4kgbb2 B:297-516 automated matches                                                                                                                                                                                    SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhh.......eeee........hhhhhhhhhhhh...eeee..........hhhhhhh..eeeeee.....hhhhhhhhhh...eeee.hhhhhhhhhhhhhh...eeee.....hhhhhh..eeee...eeee.....eeee..eeeeeee...eeeeeee..ee.....ee.hhhhhhhhhhhh..eeeeeeee.ee.............hhhhh.eeee...............hhhhhhhhhhhhhhhhhh...eeeee..hhhhhhhhhh.....eeeee...eeee....hhhhh.............eeeeeee.hhhhhhhhhhh....eeee...eee....ee.......hhhhhhhh...eeeee...........ee..............eee...eeeeee...eeeeeee....hhhhhhhh.....eeeeeeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kgb B  34 GKIYESAIDAVADVQDGAQILFGGFGICGIPEKMINALKQKGVKNITGVSNNGGVDDTGLGVLIKQKQVSKVIGSYVGENTELVRQYLEGELAVELTPQGTLAEKIRAGGAGIPAFYTPTGYATLVQEGGAPIKYSGKVEISSEKKPVKEFNGKNYVMEESIFADFAFVKAQKADPLGNLVFNKAARNFNAPMCRAAKITVAEVEEIVPIGALSPDEIHVPGIYINRIFKGTNYNKRVERLRITPNPAQVLRERIARRVALEFHDGMYANLGIGIPVLSSNYIPKGMNVMLQSENGILGLGPFPTKDKVDPDLINAGKESVTVVPGASYFGSDDSFAMIRGGHVDITILGAMEVSATGDLANWMKGMGGAMDLVAAPGTKVIITMEHNARDGSPKILDTCSLPLTGKGVIDMIISEKAVFTVEKGVGLTLIEVAEGYTVDDIIASTGAKFTVSPNLKKMGQIPV 516
                                    43        53        63        73        83        93       103       113       123       133       143       153       163     ||175       185       195       205       215       225       235       245       255       265       275   ||  296       306       316       326       336       346       356       366       376       386       396       406   ||  422       432       442       452       462       472       482       492       502       512    
                                                                                                                                                                 169|                                                                                                        279|                                                                                                                    410|                                                                                                   
                                                                                                                                                                  172                                                                                                         291                                                                                                                     417
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KGB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KGB)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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    Gly B:172 - Lys B:173   [ RasMol ]  
    Gly B:444 - Ser B:445   [ RasMol ]  
    Lys A:331 - Gly A:332   [ RasMol ]  
    Pro B:291 - Asn B:292   [ RasMol ]  
    Val A:416 - Lys A:417   [ RasMol ]  
 

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