4KFU - JenaLib

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Title :   STRUCTURE OF THE GENOME PACKAGING NTPASE B204 FROM SULFOLOBUS TURRETED ICOSAHEDRAL VIRUS 2 IN COMPLEX WITH AMPPCP

Authors :   L. J. Happonen, E. Oksanen, T. Kajander, A. Goldman, S. Butcher

Date :   27 Apr 13 (Deposition) - 22 May 13 (Release) - 24 Jul 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.89

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Ftsk-Hera Superfamily, P-Loop Atpase, Genome Packaging Ntpase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. J. Happonen, E. Oksanen, L. Liljeroos, A. Goldman, T. Kajander, S. J. Butcher
The Structure Of The Ntpase That Powers Dna Packaging Into Sulfolobus Turreted Icosahedral Virus 2.
J. Virol. V. 87 8388 2013
PubMed-ID: 23698307 | Reference-DOI: 10.1128/JVI.00831-13

Molecule 1 - GENOME PACKAGING NTPASE B204
	Chains	:	A, B, C, D
	EC Number	:	3.-.-.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET22B
	Expression System Strain	:	ER2566/PTF16
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	B204, STIV2_B204
	Organism Common	:	STIV2
	Organism Scientific	:	SULFOLOBUS TURRETED ICOSAHEDRAL VIRUS 2
	Organism Taxid	:	754004

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 18)

No.	Name	Count	Type	Full Name
1	ACP	6	Ligand/Ion	PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2	FLC	4	Ligand/Ion	CITRATE ANION
3	MG	6	Ligand/Ion	MAGNESIUM ION
4	ZN	2	Ligand/Ion	ZINC ION

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	ACP	2	Ligand/Ion	PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2	FLC	2	Ligand/Ion	CITRATE ANION
3	MG	-1	Ligand/Ion	MAGNESIUM ION
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	ACP	2	Ligand/Ion	PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2	FLC	2	Ligand/Ion	CITRATE ANION
3	MG	-1	Ligand/Ion	MAGNESIUM ION
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	ACP	1	Ligand/Ion	PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2	FLC	-1	Ligand/Ion	CITRATE ANION
3	MG	-1	Ligand/Ion	MAGNESIUM ION
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	ACP	1	Ligand/Ion	PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2	FLC	-1	Ligand/Ion	CITRATE ANION
3	MG	-1	Ligand/Ion	MAGNESIUM ION
4	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (18, 18)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:12 , LYS A:13 , LYS A:14 , SER A:15 , GLY A:16 , LYS A:17 , SER A:18 , TYR A:19 , GLN A:138 , TYR A:186 , ILE A:204 , MG A:307 , HOH A:401 , HOH A:403 , HOH A:412 , HOH A:416 , HOH A:417 , HOH A:429 , HOH A:466 , HOH A:484	BINDING SITE FOR RESIDUE ACP A 301
02	AC2	SOFTWARE	TYR A:158 , LEU A:183 , LYS A:184 , GLN A:185 , MET C:1 , ASN C:2 , PRO C:3 , VAL C:28 , HIS C:32 , ILE C:34	BINDING SITE FOR RESIDUE ACP A 302
03	AC3	SOFTWARE	PRO A:162 , MG A:306 , HOH A:453 , HOH A:493 , HOH A:503 , HOH A:505 , HIS C:124 , ALA C:125 , ASN C:126 , ARG C:127 , HIS C:128 , GLN C:150 , HOH C:404	BINDING SITE FOR RESIDUE FLC A 303
04	AC4	SOFTWARE	ARG A:160 , MG A:305 , HOH A:506 , HOH A:507 , HOH A:508 , ASN C:2 , ASP C:192 , ASN C:194	BINDING SITE FOR RESIDUE FLC A 304
05	AC5	SOFTWARE	FLC A:304 , HOH A:506 , HOH A:507 , HOH A:508 , ASP C:5	BINDING SITE FOR RESIDUE MG A 305
06	AC6	SOFTWARE	FLC A:303 , HOH A:503 , HOH A:504 , HOH A:505 , ASN C:126 , ARG C:127 , ASP C:152	BINDING SITE FOR RESIDUE MG A 306
07	AC7	SOFTWARE	SER A:18 , ACP A:301 , HOH A:403 , HOH A:429 , HOH A:484	BINDING SITE FOR RESIDUE MG A 307
08	AC8	SOFTWARE	ASP A:39 , HIS A:41 , ASP A:73 , HIS A:108	BINDING SITE FOR RESIDUE ZN A 308
09	AC9	SOFTWARE	ARG B:12 , LYS B:13 , LYS B:14 , SER B:15 , GLY B:16 , LYS B:17 , SER B:18 , TYR B:19 , TYR B:186 , ILE B:204 , MG B:307 , HOH B:403 , HOH B:404 , HOH B:408 , HOH B:409 , HOH B:412 , HOH B:414 , HOH B:419 , HOH B:449 , HOH B:500	BINDING SITE FOR RESIDUE ACP B 301
10	BC1	SOFTWARE	TYR B:158 , LEU B:183 , LYS B:184 , GLN B:185 , MET D:1 , ASN D:2 , PRO D:3 , VAL D:28 , LEU D:29 , HIS D:32 , ILE D:34	BINDING SITE FOR RESIDUE ACP B 302
11	BC2	SOFTWARE	PRO B:162 , MG B:306 , HOH B:491 , HOH B:492 , HOH B:514 , HOH B:515 , HIS D:124 , ALA D:125 , ASN D:126 , ARG D:127 , HIS D:128 , GLN D:150 , HOH D:419 , HOH D:480	BINDING SITE FOR RESIDUE FLC B 303
12	BC3	SOFTWARE	ARG B:160 , MG B:305 , HOH B:517 , HOH B:518 , HOH B:519 , MET D:1 , ASP D:192 , ASN D:194 , HOH D:410 , HOH D:420	BINDING SITE FOR RESIDUE FLC B 304
13	BC4	SOFTWARE	ARG B:160 , FLC B:304 , HOH B:422 , HOH B:516 , HOH B:517 , HOH B:518 , ASN D:2 , ASP D:5 , ASP D:152 , ASN D:194	BINDING SITE FOR RESIDUE MG B 305
14	BC5	SOFTWARE	FLC B:303 , HOH B:515 , GLN D:150 , ASP D:152 , HOH D:414	BINDING SITE FOR RESIDUE MG B 306
15	BC6	SOFTWARE	SER B:18 , ACP B:301 , HOH B:409 , HOH B:412 , HOH B:414	BINDING SITE FOR RESIDUE MG B 307
16	BC7	SOFTWARE	ASP B:39 , HIS B:41 , ASP B:73 , HIS B:108	BINDING SITE FOR RESIDUE ZN B 308
17	BC8	SOFTWARE	LYS C:14 , GLY C:16 , LYS C:17 , SER C:18 , TYR C:19 , TYR C:186 , PRO C:203 , ILE C:204 , HOH C:497 , HOH C:504	BINDING SITE FOR RESIDUE ACP C 301
18	BC9	SOFTWARE	LYS D:14 , GLY D:16 , LYS D:17 , SER D:18 , TYR D:19 , TYR D:186 , ILE D:204 , HOH D:458 , HOH D:467 , HOH D:468	BINDING SITE FOR RESIDUE ACP D 301

(no "SS Bond" information available for 4KFU)

(no "Cis Peptide Bond" information available for 4KFU)

(no "SAP(SNP)/Variant" information available for 4KFU)

(no "PROSITE Motif" information available for 4KFU)

(no "Exon" information available for 4KFU)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.....hhhhhhhhhhhhhhhhh..eeeeee.........hhhhhee..hhhhhhhh.eeeee....hhhhhhhhhhhhhhhhhhhh.eeeee.hhhhh.......hhhhhhhhhh.....eeeeeee.hhhhhhhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhhhhhh....eeeee....eeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kfu A   2 NPDDIVVLVGRKKSGKSYLIKHYFIPVLKAHKISYIIDDHNLLRSGSEYSKFGYNATSLSDIVSKQYVVVYDRAKNDDFFEKLWQASKLHSKKYGTTVLIIDEAYYHFKYKQKVTPAIDEALHANRHAGLGLILSTQRVYDLMPIVYKQADLIIMFYTREPNELRWISKYISAEAAEKVKTLKQYHFLIYDVNSQTIKIHKPILE 206
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201

Chain B from PDB  Type:PROTEIN  Length:196
                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee.....hhhhhhhhhhhhhhhhh..eeeeee....hhhhheee.hhhhhhhh.eeeee...hhhhhhhhhhhhhhhhhh.eeeeee............hhhhhhhhhhhhhhheeeeeee.hhhhhhhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhhhhhh....eeeee....eeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kfu B   2 NPDDIVVLVGRKKSGKSYLIKHYFIPVLKAHKISYIIDDHNSEYSKFGYNATSLSDIVSKQYVVVYDRDDFFEKLWQASKLHSKKYGTTVLIIDEAYYHFKYKQKVTPAIDEALHANRHAGLGLILSTQRVYDLMPIVYKQADLIIMFYTREPNELRWISKYISAEAAEKVKTLKQYHFLIYDVNSQTIKIHKPIL 205
                                    11        21        31        41||      56        66       |79        89        99       109       119       129       139       149       159       169       179       189       199      
                                                                   42|                        74|                                                                                                                               
                                                                    48                         78

Chain C from PDB  Type:PROTEIN  Length:195
                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee.....hhhhhhhhhhhhhhhhh..eeeeee...hhhhhee...hhhhhhh.eeeee...hhhhhhhhhhhhhhhhh.eeeee.hhhhh.......hhhhhhhhhhhhhhheeeeeee.hhhhhhhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhhhhhh....eeeee....eeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kfu C   1 MNPDDIVVLVGRKKSGKSYLIKHYFIPVLKAHKISYIIDDHSEYSKFGYNATSLSDIVSKQYVVVYDRDFFEKLWQASKLHSKKYGTTVLIIDEAYYHFKYKQKVTPAIDEALHANRHAGLGLILSTQRVYDLMPIVYKQADLIIMFYTREPNELRWISKYISAEAAEKVKTLKQYHFLIYDVNSQTIKIHKPIL 205
                                    10        20        30        40||      56        66       |80        90       100       110       120       130       140       150       160       170       180       190       200     
                                                                   41|                        74|                                                                                                                              
                                                                    48                         79

Chain D from PDB  Type:PROTEIN  Length:195
                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee.....hhhhhhhhhhhhhhhhh..eeeeee....hhhhheee.hhhhhhhh.eeeee...hhhhhhhhhhhhhhhhh.eeeee..hhhhhh.....hhhhhhhhhhhhhhheeeeeee.hhhhhhhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhhhhhh....eeeee....eeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4kfu D   1 MNPDDIVVLVGRKKSGKSYLIKHYFIPVLKAHKISYIIDDHGSEYSKFGYNATSLSDIVSKQYVVVYDRDFFEKLWQASKLHSKKYGTTVLIIDEAYYHFKYKQKVTPAIDEALHANRHAGLGLILSTQRVYDLMPIVYKQADLIIMFYTREPNELRWISKYISAEAAEKVKTLKQYHFLIYDVNSQTIKIHKPI 204
                                    10        20        30        40||      55        65        79        89        99       109       119       129       139       149       159       169       179       189       199     
                                                                   41|                         74|                                                                                                                             
                                                                    47                          79

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 4KFU)

(no "CATH Domain" information available for 4KFU)

(no "Pfam Domain" information available for 4KFU)

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	4kfu
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	D5IEZ9_9VIRU \| D5IEZ9	:	4kfr 4kfs 4kft

4kfr	STRUCTURE OF THE GENOME PACKAGING NTPASE B204 FROM SULFOLOBUS TURRETED ICOSAHEDRAL VIRUS 2 IN COMPLEX WITH SULFATE
4kfs	STRUCTURE OF THE GENOME PACKAGING NTPASE B204 FROM SULFOLOBUS TURRETED ICOSAHEDRAL VIRUS 2 IN COMPLEX WITH AMP
4kft	STRUCTURE OF THE GENOME PACKAGING NTPASE B204 FROM SULFOLOBUS TURRETED ICOSAHEDRAL VIRUS 2 IN COMPLEX WITH ATPGAMMAS

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Ligands, Modified Residues, Ions (4, 18)

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