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(-) Description

Title :  NUP188(AA1-1160) FROM MYCELIOPHTHORA THERMOPHILA
 
Authors :  T. U. Schwartz, K. R. Andersen
Date :  26 Apr 13  (Deposition) - 19 Jun 13  (Release) - 14 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym./Biol. Unit :  A
Keywords :  Nucleoporin, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. R. Andersen, E. Onischenko, J. H. Tang, P. Kumar, J. Z. Chen, A. Ulrich, J. T. Liphardt, K. Weis, T. U. Schwartz
Scaffold Nucleoporins Nup188 And Nup192 Share Structural An Functional Properties With Nuclear Transport Receptors.
Elife V. 2 00745 2013
PubMed-ID: 23795296  |  Reference-DOI: 10.7554/ELIFE.00745

(-) Compounds

Molecule 1 - NUP188
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: N-TERMINAL DOMAIN (UNP RESIDUES 1-1160)
    Gene: MYCTH_2303581
    Organism Scientific: MYCELIOPHTHORA THERMOPHILA
    Organism Taxid: 78579

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4KF7)

(-) Sites  (0, 0)

(no "Site" information available for 4KF7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KF7)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Phe A:600 -Pro A:601

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KF7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KF7)

(-) Exons   (0, 0)

(no "Exon" information available for 4KF7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1096
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhh.....hhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhh.......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh...hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhh.....hhhhhhhhhhhhh..hhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh..hhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhh...eeee.hhhhh..ee.........eeee...ee.eee......ee....eeee......eeee....hhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhh........hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh..........hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh.......hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4kf7 A    1 MATLTDRSYFPPLGECLSGNKIILSWRLVATALEDLACDRLRSAAVSAFLRDGYVHQLLREPTKTFAPPTNETKLDFETKTGAIDPYNLDTIKDDARWLSRNVNINEVAALRVVIIEYQSRAHSHLTGPLSTQDVANVQEAAGVGDAQASAIVALLNVTTVADADSAWADFESETTRRRRLLATYLSERRSFLAAVDALLAFLLHSRAPGTGVELDPLRNAVLQGAFGFDQNAAKPDTTQLDALAPTYIRTLEGCFDRMQMAPESLDNQMLTEQFEVDWIRTALTEAIHAMSLIFQILDLKASQFAAPALVTQWFALMDTCEFFEPVPRGHELIAELLMPLHSLVAAISLKLLNVDRTLSYLDQDVDLLEEEEPYLASSDNLAQMHTTIAAAASAGLISTMPVVFAWSLILHQMHVGYQERAERRDLLQNQRAQAGFELGSIVSIEASSYDVFLVSQQLERNIEPAENMARIATGRGQVYELMADMAVCLGSGQLAAFRPVLGARARLTFQDLLKRSAHYVGYQAEPVSCLLSILSGGSQYWDISAEAPSNEKSALDIYTRMLSDDTLNVQYASQSRNRFPYEFLPFASMCRILSAALVSDNESSELITGLLVKNPSLTLNWDPRWDRSYELVFEEENTNSFRLTKDIDLFDAAPEEKCTISRGTFGRFVTDVGRVAKLEFEHSTLALFGKRLEVNLMAGAYDTALGYLSADELIEGISLLATVLRAETLRSSKTDPDRGLRILTEASRLLSRGRDIMNVVCDTLDSLVEEELADLDGPKTAALSSCLQFLHAALPVCPGRVWAYMARCPLINTDTRSGRLSRITANLDMLAERYDLLLSAVKLFSSLVDSAKTSAVPWIGASDKIVSRVTLSIAQTSVDVFENSATWRFPSEVDRSVMIRDVVGIMHKLMLYTHSVLTGPLAPAADYVVESFLSSSSSSLRFQPLLATLLAAFQLPDTTIYQRRAQIVSERLTTVLEFATILLRVADYLNKASAGIQTQLFKSACVIARLPAIRHSFRIPAISLLSALVESAGKSSGEPPSLLGYLGPQVSRSFIQIAAQLDKPFDRVAEVASTWRFFSTILRNRQQWMANCLLT 1149
                                    10        20        30        40        50        60        70        80   ||   97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670   ||  688       698       708       718       728       738       748       758       768       778       788       798       808       818       828       838       848       858       868       878      |905       915       925       935       945       955      |973       983       993      1003      1013      1023      1033      1043      1053      1063      1073      1083      1093      1103      1113      1123      1133      1143      
                                                                                                              84|                                                                                                                                                                                                                                                                                                                                                               446|                                                                                                                                                                                                                   674|                                                                                                                                                                                                       885|                                                        962|                                                                                                                                                                                  
                                                                                                               92                                                                                                                                                                                                                                                                                                                                                                460                                                                                                                                                                                                                    683                                                                                                                                                                                                        903                                                         971
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4KF7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KF7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KF7)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Phe A:600 - Pro A:601   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        G2QD05_MYCTT | G2QD05: 4kf8

(-) Related Entries Specified in the PDB File

4kf8