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(-) Description

Title :  CROSSLINKED CRYSTAL STRUCTURE OF TYPE II FATTY SYNTHASE DEHYDRATASE, FABA, AND ACYL CARRIER PROTEIN, ACPP
 
Authors :  C. Nguyen, R. Haushalter, K. Finzel, J. Leong, B. C. Le, M. Burkart, S. C.
Date :  25 Apr 13  (Deposition) - 25 Dec 13  (Release) - 29 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Fatty Acid Synthesis, Protein-Protein Complex, Dehydratase/Isomerase, Acyl Carrier Protein, Isomerase-Biosynthetic Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Nguyen, R. W. Haushalter, D. J. Lee, P. R. Markwick, J. Bruegger, G. Caldara-Festin, K. Finzel, D. R. Jackson, F. Ishikawa, B. O'Dowd, J. A. Mccammon, S. J. Opella, S. C. Tsai, M. D. Burkart
Trapping The Dynamic Acyl Carrier Protein In Fatty Acid Biosynthesis.
Nature V. 505 427 2014
PubMed-ID: 24362570  |  Reference-DOI: 10.1038/NATURE12810

(-) Compounds

Molecule 1 - N-{3-[DIHYDROXY(NONYL)-LAMBDA~4~-SULFANYL]PROPYL}-N~3~- [(2R)-2-HYDROXY-3,3-DIMETHYL-4-(PHOSPHONOOXY)BUTANOYL]-BETA- ALANINAMIDE
    Chains: A, B
    EC Number: 4.2.1.59, 5.3.3.14
    Engineered: YES
    Synonym: 3-HYDROXYACYL-[ACYL-CARRIER-PROTEIN] DEHYDRATASE FABA, BETA- HYDROXYDECANOYL THIOESTER DEHYDRASE, TRANS-2-DECENOYL-[ACYL-CARRIER- PROTEIN] ISOMERASE
    Synthetic: YES
 
Molecule 2 - ACYL CARRIER PROTEIN
    Chains: C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ACPP
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: ACP

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
11R32Ligand/IonN-{3-[DIHYDROXY(NONYL)-LAMBDA~4~-SULFANYL]PROPYL}-N~3~-[(2R)-2-HYDROXY-3,3-DIMETHYL-4-(PHOSPHONOOXY)BUTANOYL]-BETA-ALANINAMIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:70 , PHE A:71 , MET A:77 , PRO A:78 , GLY A:79 , PHE A:113 , THR A:114 , GLY A:115 , GLN A:116 , HOH A:356 , HOH A:405 , HOH A:408 , HOH A:418 , GLN B:27 , GLY B:91 , ARG B:104 , ALA B:105 , ARG B:137 , HOH B:375 , ASP C:35 , SER C:36 , LEU C:37 , HOH C:103BINDING SITE FOR RESIDUE 1R3 A 201
2AC2SOFTWAREGLN A:27 , TRP A:87 , GLY A:103 , ARG A:104 , ALA A:105 , HOH A:347 , HIS B:70 , PHE B:71 , MET B:77 , PRO B:78 , GLY B:79 , PHE B:113 , THR B:114 , GLY B:115 , GLN B:116 , TYR B:155 , HOH B:308 , HOH B:328 , HOH B:395 , ASP D:35 , SER D:36 , LEU D:37BINDING SITE FOR RESIDUE 1R3 B 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4KEH)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Pro A:31 -Asn A:32
2His A:70 -Phe A:71
3Pro B:31 -Asn B:32
4His B:70 -Phe B:71
5His C:75 -Gln C:76

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4KEH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4KEH)

(-) Exons   (0, 0)

(no "Exon" information available for 4KEH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:166
                                                                                                                                                                                                      
               SCOP domains d4keha_ A: beta-Hydroxydecanol thiol ester dehydrase                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhh....................eeeeee.........eeeeeee....hhhhhhh.......hhhhhhhhhhhhhhhhhhhh....eeeeeee..eee.........eeeeeeeeeeeee...eeeeeeeeeee..eeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4keh A   1 VDKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMTETGGNFDKGYVEAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGEVKFTGQVLPTAKKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASDLKVGLFQ 166
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160      


Chain B from PDB  Type:PROTEIN  Length:165
                                                                                                                                                                                                     
               SCOP domains d4kehb_ B: beta-Hydroxydecanol thiol ester dehydrase                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhh....................eeeeee.........eeeeeee....hhhhhhh.......hhhhhhhhhhhhhhhhhhhh....eeeeeee.eeee.........eeeeeeeeeeeee...eeeeeeeeeee..eeeeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4keh B   3 KRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMTETGGNFDKGYVEAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEGKGRALGVGEVKFTGQVLPTAKKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASDLKVGLFQD 167
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162     


Chain C from PDB  Type:PROTEIN  Length:77
                                                                                                             
               SCOP domains d4kehc_ C: Acyl carrier protein                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh.hhhhh............hhhhhhhhhhhhhhhh....hhhhhh...hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                 4keh C   1 STIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGHQA  77
                                    10        20        30        40        50        60        70       


Chain D from PDB  Type:PROTEIN  Length:77
                                                                                                             
               SCOP domains d4kehd_ D: Acyl carrier protein                                               SCOP domains
               CATH domains ----------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh..hhhhh............hhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------- Transcript
                 4keh D   1 STIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGHQA  77
                                    10        20        30        40        50        60        70
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 4)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4KEH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4KEH)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FABA_ECOLI | P0A6Q3: 1mka 1mkb

(-) Related Entries Specified in the PDB File

1mka 2k92