4K9U - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   COMPLEX OF HUMAN CYP3A4 WITH A DESOXYRITONAVIR ANALOG

Authors :   I. F. Sevrioukova, T. L. Poulos

Date :   21 Apr 13 (Deposition) - 19 Jun 13 (Release) - 29 Oct 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.85

Chains :   Asym./Biol. Unit : A

Keywords :   Cytochrome P450 3A4, Alpha-Beta Protein, Cytochrome P450 Fold, Monooxygenase, Cytochrome P450 Reductase, Endoplasmic Reticulum, Oxidoreductase-Oxidoreductase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   I. F. Sevrioukova, T. L. Poulos
Dissecting Cytochrome P450 3A4-Ligand Interactions Using Ritonavir Analogues.
Biochemistry V. 52 4474 2013
PubMed-ID: 23746300 | Reference-DOI: 10.1021/BI4005396

Molecule 1 - CYTOCHROME P450 3A4
	Chains	:	A
	EC Number	:	1.14.13.-, 1.14.13.157, 1.14.13.32, 1.14.13.67, 1.14.13.97
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PCWORI
	Gene	:	CYP3A3, CYP3A4
	Mutation	:	YES
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Strain	:	HUMAN
	Synonym	:	1,8-CINEOLE 2-EXO-MONOOXYGENASE, ALBENDAZOLE MONOOXYGENASE, ALBENDAZOLE SULFOXIDASE, CYPIIIA3, CYPIIIA4, CYTOCHROME P450 3A3, CYTOCHROME P450 HLP, CYTOCHROME P450 NF-25, CYTOCHROME P450-PCN1, NIFEDIPINE OXIDASE, QUININE 3-MONOOXYGENASE, TAUROCHENODEOXYCHOLATE 6-ALPHA-HYDROXYLASE

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 3)

No.	Name	Count	Type	Full Name
1	5AW	2	Ligand/Ion	N~2~-(METHYL{[2-(PROPAN-2-YL)-1,3-THIAZOL-4-YL]METHYL}CARBAMOYL)-N-[(2S,5S)-5-{[(1,3-THIAZOL-5-YLMETHOXY)CARBONYL]AMINO}HEXAN-2-YL]-D-VALINAMIDE
2	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:105 , ILE A:118 , SER A:119 , TRP A:126 , ARG A:130 , ALA A:305 , THR A:309 , LEU A:373 , ARG A:375 , PRO A:434 , PHE A:435 , GLY A:436 , SER A:437 , ARG A:440 , ASN A:441 , CYS A:442 , GLY A:444 , 5AW A:602	BINDING SITE FOR RESIDUE HEM A 601
2	AC2	SOFTWARE	LYS A:208 , LYS A:209 , PHE A:220 , VAL A:240 , ARG A:243 , GLU A:244 , PHE A:304 , ALA A:305 , THR A:309 , HEM A:601 , 5AW A:603	BINDING SITE FOR RESIDUE 5AW A 602
3	AC3	SOFTWARE	PHE A:108 , SER A:119 , LEU A:216 , ASP A:217 , PHE A:304 , GLU A:308 , GLY A:481 , LEU A:482 , GLN A:484 , 5AW A:602	BINDING SITE FOR RESIDUE 5AW A 603

(no "SS Bond" information available for 4K9U)

Asymmetric/Biological Unit

No.	Residues
1	Ile A:473	-	Pro A:474

(no "SAP(SNP)/Variant" information available for 4K9U)

(no "PROSITE Motif" information available for 4K9U)

(no "Exon" information available for 4K9U)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:450
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains d4k9ua_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhh............hhhhhhhhhhhhhhhhhhhhh.eeeeee..eeeeee.hhhhhhhhhh...............hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eehhhhhhhhhhhhhhhhhh.............hhhhhhh.hhhhhhhhhh..hhhhhhhhh......hhhhhhhhhhhhhhhh.....hhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.....eeee....eee..eee....eeeehhhhhhhhhhhh......hhhhhhhhhhh...........hhhhh..hhhhhhhhhhhhhhhhhh..eee.......................eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4k9u A  27 THSHGLFKKLGIPGPTPLPFLGNILSYHKGFCMFDMECHKKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVGFMKSAISIAEDEEWKRLRSLLSPTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFGVNIDSLNNPQDPFVENTKKLDPFFLSITVFPFLIPILEVLNICVFPREVTNFLRKSVKRMKESRLEDDFLQLMIDSQNALSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPNKAPPTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEINGMFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKETQIPLKLSLGGLLQPEKPVVLKVESR 496
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206  ||   222       232       242       252       262||     278 ||    296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496
                                                                                                                                                                                                                209|                                            263|       280|                                                                                                                                                                                                               
                                                                                                                                                                                                                 216                                             270        289

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Cytochrome P450 (480)

Superfamily: Cytochrome P450 (480)

Family: Cytochrome P450 (323)

Protein domain: automated matches (44)

Human (Homo sapiens) [TaxId: 9606] (17)

d4k9ua_

(no "CATH Domain" information available for 4K9U)

(no "Pfam Domain" information available for 4K9U)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Ile A:473 - Pro A:474	[ RasMol ]

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	4k9u
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	CP3A4_HUMAN \| P08684
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	1.14.13.-
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	1.14.13.157
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		Pathway	:	KEGG \| MetaCyc
	1.14.13.32
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	1.14.13.67
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	1.14.13.97
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 3)

Sites (3, 3)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

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Pfam Domains (0, 0)

Gene Ontology (41, 41)

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