4K8B - JenaLib

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Title :   CRYSTAL STRUCTURE OF HCV NS3/4A PROTEASE COMPLEXED WITH INHIBITOR

Authors :   H. Nar

Date :   18 Apr 13 (Deposition) - 26 Mar 14 (Release) - 26 Mar 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,C  (1x)
Biol. Unit 2: B,D  (1x)

Keywords :   Protease, Hydrolase-Hydrolase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. R. Laplante, H. Nar, C. T. Lemke, A. Jakalian, N. Aubry, S. H. Kawai
Ligand Bioactive Conformation Plays A Critical Role In The Design Of Drugs That Target The Hepatitis C Virus Ns3 Protease.
J. Med. Chem. V. 57 1777 2014
PubMed-ID: 24144444 | Reference-DOI: 10.1021/JM401338C

Molecule 1 - NS3 PROTEASE
	Chains	:	A, B
	EC Number	:	3.4.21.98
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	HEPATITIS C VIRUS
	Organism Taxid	:	11103

Molecule 2 - NONSTRUCTURAL PROTEIN
	Chains	:	C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	UNP RESIDUES 107-118
	Gene	:	NS3-NS4
	Organism Scientific	:	HEPATITIS C VIRUS
	Organism Taxid	:	11103
	Synonym	:	NON-STRUCTURAL PROTEIN 4A

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A		C
Biological Unit 2 (1x)	:		B		D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 8)

No.	Name	Count	Type	Full Name
1	1RR	2	Ligand/Ion	N-(TERT-BUTYLCARBAMOYL)-3-METHYL-L-VALYL-(4R)-N-[(1R,2S)-1-CARBOXY-2-ETHENYLCYCLOPROPYL]-4-[(7-METHOXY-2-PHENYLQUINOLIN-4-YL)OXY]-L-PROLINAMIDE
2	SO4	4	Ligand/Ion	SULFATE ION
3	ZN	2	Ligand/Ion	ZINC ION

Biological Unit 1 (2, 3)

No.	Name	Count	Type	Full Name
1	1RR	1	Ligand/Ion	N-(TERT-BUTYLCARBAMOYL)-3-METHYL-L-VALYL-(4R)-N-[(1R,2S)-1-CARBOXY-2-ETHENYLCYCLOPROPYL]-4-[(7-METHOXY-2-PHENYLQUINOLIN-4-YL)OXY]-L-PROLINAMIDE
2	SO4	2	Ligand/Ion	SULFATE ION
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (2, 3)

No.	Name	Count	Type	Full Name
1	1RR	1	Ligand/Ion	N-(TERT-BUTYLCARBAMOYL)-3-METHYL-L-VALYL-(4R)-N-[(1R,2S)-1-CARBOXY-2-ETHENYLCYCLOPROPYL]-4-[(7-METHOXY-2-PHENYLQUINOLIN-4-YL)OXY]-L-PROLINAMIDE
2	SO4	2	Ligand/Ion	SULFATE ION
3	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	CYS A:97 , THR A:98 , CYS A:99 , CYS A:145 , HOH A:306	BINDING SITE FOR RESIDUE ZN A 201
2	AC2	SOFTWARE	TYR A:56 , HIS A:57 , VAL A:78 , ASP A:79 , ASP A:81 , ARG A:123 , VAL A:132 , LEU A:135 , LYS A:136 , GLY A:137 , SER A:138 , SER A:139 , PHE A:154 , ARG A:155 , ALA A:156 , ALA A:157 , CYS A:159 , ASP A:168 , HOH A:345 , VAL B:78 , 1RR B:202	BINDING SITE FOR RESIDUE 1RR A 202
3	AC3	SOFTWARE	ARG A:11 , GLY A:15 , ASN A:27 , ARG B:11 , GLY B:15 , ASN B:27	BINDING SITE FOR RESIDUE SO4 A 203
4	AC4	SOFTWARE	LEU A:21 , ARG A:24 , LYS A:26 , HOH A:331 , GLN B:9 , GLY B:12 , LEU B:13	BINDING SITE FOR RESIDUE SO4 A 204
5	AC5	SOFTWARE	CYS B:97 , THR B:98 , CYS B:99 , CYS B:145 , HOH B:325	BINDING SITE FOR RESIDUE ZN B 201
6	AC6	SOFTWARE	TYR A:56 , ASP A:79 , 1RR A:202 , TYR B:56 , HIS B:57 , ASP B:79 , ASP B:81 , ARG B:123 , VAL B:132 , LEU B:135 , LYS B:136 , GLY B:137 , SER B:138 , SER B:139 , PHE B:154 , ARG B:155 , ALA B:156 , ALA B:157 , CYS B:159 , HOH B:302 , HOH B:314 , HOH B:316	BINDING SITE FOR RESIDUE 1RR B 202
7	AC7	SOFTWARE	GLY A:12 , LEU A:13 , LEU A:14 , ARG B:24 , LYS B:26	BINDING SITE FOR RESIDUE SO4 B 203
8	AC8	SOFTWARE	GLN A:28 , GLU A:30 , GLN B:28 , ARG C:228 , ARG D:228	BINDING SITE FOR RESIDUE SO4 D 301

(no "SS Bond" information available for 4K8B)

(no "Cis Peptide Bond" information available for 4K8B)

(no "SAP(SNP)/Variant" information available for 4K8B)

(no "PROSITE Motif" information available for 4K8B)

(no "Exon" information available for 4K8B)

Asymmetric Unit

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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains d4k8ba_ A: automated matches                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..hhhhhhhhhhhh.........eeeee....eeeeeee..eeeeehhhhh...eee..eee...eee....eeeee................eeeee.....eeeeee....eeeeeeeeehhhhh.....eee.....eeeeeeeeeee..eeeeeeeeehhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k8b A   3 ITAYSQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDFVPVESMETTM 179
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

Chain B from PDB  Type:PROTEIN  Length:177
                                                                                                                                                                                                                 
               SCOP domains d4k8bb_ B: automated matches                                                                                                                                                      SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee..hhhhhhhhhhhh.........eeeee....eeeeeee..eeeeehhhhh..eeee..eee...eee....eeeee................eeeee.....eeeeee....eeeeeeeeehhhhh.....eee.....eeeeeeeeeee..eeeeeeeeehhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k8b B   3 ITAYSQQTRGLLGCIITSLTGRDKNQVEGEVQVVSTATQSFLATCVNGVCWTVYHGAGSKTLAGPKGPITQMYTNVDQDLVGWQAPPGARSLTPCTCGSSDLYLVTRHADVIPVRRRGDSRGSLLSPRPVSYLKGSSGGPLLCPSGHAVGIFRAAVCTRGVAKAVDFVPVESMETTM 179
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172

Chain C from PDB  Type:PROTEIN  Length:12
                                            
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author ...eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                 4k8b C 221 GSVVIVGRIILS 232
                                   230

Chain D from PDB  Type:PROTEIN  Length:12
                                            
               SCOP domains ------------ SCOP domains
               CATH domains ------------ CATH domains
               Pfam domains ------------ Pfam domains
         Sec.struct. author .eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------ SAPs(SNPs)
                    PROSITE ------------ PROSITE
                 Transcript ------------ Transcript
                 4k8b D 221 GSVVIVGRIILS 232
                                   230

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

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Class: All beta proteins (24004)

Fold: Trypsin-like serine proteases (1752)

Superfamily: Trypsin-like serine proteases (1752)

Family: Viral proteases (62)

Protein domain: automated matches (23)

Hepatitis C virus [TaxId: 11103] (3)

1a	d4k8ba_	A:
1b	d4k8bb_	B:

(no "CATH Domain" information available for 4K8B)

(no "Pfam Domain" information available for 4K8B)

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Description

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Ligands, Modified Residues, Ions (3, 8)

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