4K7X - JenaLib

Title :   CRYSTAL STRUCTURE OF A 4-HYDROXYPROLINE EPIMERASE FROM BURKHOLDERIA MULTIVORANS, TARGET EFI-506479, WITH BOUND PHOSPHATE, CLOSED DOMAINS

Authors :   M. W. Vetting, R. Toro, R. Bhosle, N. F. Al Obaidi, L. L. Morisco, S. R. Wa S. Sojitra, M. Stead, E. Washington, A. Scott Glenn, S. Chowdhury, B. J. Hammonds, B. Hillerich, J. Love, R. D. Seidel, H. J. Imker, J. A. Gerl S. C. Almo, Enzyme Function Initiative (Efi)

Date :   17 Apr 13 (Deposition) - 01 May 13 (Release) - 01 May 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.75

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Proline Racemase Family, Proposed 4-Oh Proline Epimerase, Enzyme Function Initiative, Efi, Structural Genomics, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. W. Vetting, R. Toro, R. Bhosle, N. F. Al Obaidi, L. L. Morisco, S. R. Wasserman, S. Sojitra, M. Stead, E. Washington, A. Scott Glenn, S. Chowdhury, B. Evans, J. Hammonds, B. Hillerich, J. Love, R. D. Seidel, H. J. Imker, J. A. Gerlt, S. C. Almo, Enzyme Function Initiative (Efi)
Crystal Structure Of A 4-Hydroxyproline Epimerase From Burkholderia Multivorans, Target Efi-506479, With Bound Phosphate, Closed Domains
To Be Published
PubMed: search

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 8)

Sites (8, 8)

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	CYS A:89 , GLY A:90 , HIS A:91 , ASP A:233 , CYS A:237 , GLY A:238 , THR A:239	BINDING SITE FOR RESIDUE PO4 A 401
2	AC2	SOFTWARE	ARG A:98 , HIS A:101 , HIS A:102 , HOH A:634	BINDING SITE FOR RESIDUE PO4 A 402
3	AC3	SOFTWARE	LYS A:3 , ARG A:306 , TRP A:307 , CL A:406 , HOH A:591 , HOH A:603 , HOH A:777 , HOH A:874 , HOH A:875 , HOH A:949	BINDING SITE FOR RESIDUE PO4 A 403
4	AC4	SOFTWARE	ALA A:74 , HIS A:111 , HOH A:552 , HOH A:924 , HOH A:932	BINDING SITE FOR RESIDUE PO4 A 404
5	AC5	SOFTWARE	MET A:1 , MET A:2 , LYS A:3 , VAL A:269 , HIS A:271 , ASP A:301 , HOH A:541 , HOH A:949 , HOH A:959	BINDING SITE FOR RESIDUE PO4 A 405
6	AC6	SOFTWARE	LYS A:3 , ILE A:299 , ASP A:301 , PO4 A:403	BINDING SITE FOR RESIDUE CL A 406
7	AC7	SOFTWARE	ASP A:157 , ILE A:158 , LEU A:167 , SER A:169 , GLY A:198 , ILE A:199 , THR A:200 , PHE A:213 , LYS A:244 , CYS A:247 , HOH A:528 , HOH A:533 , HOH A:568 , HOH A:611 , HOH A:772	BINDING SITE FOR RESIDUE GOL A 407
8	AC8	SOFTWARE	ASP A:216 , HIS A:219 , HOH A:555 , HOH A:650 , HOH A:662 , HOH A:678	BINDING SITE FOR RESIDUE NA A 408

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:314
                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains d4k7xa_ A: automated matches                                                                                                                                                                                                                                                                                               SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeeeeeeee..eeeeeeee........hhhhhhhhhhhhhhhhhhhhhh.........eeeee........eeeeee........hhhhhhhhhhhhhhh.....eeeeee.....eeeee.....eeee....eeeeeeeeeee...eeeeeeeee...eeeee.......hhhhhhhhhhhhhhhhhhhhhhh..hhhhh...eeeeee......eeeeee.....ee...hhhhhhhhhhhhhhh........eeeee....eeeeeeeee..eeeeeeee.eeeeeeeeeeee.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k7x A  -3 YFQSMMKRIQIIDSHTGGEPTRLVVSGFPSLGSGTMAERRDVLAREYDRYRTACILEPRGSDVLVGALLCEPVSPDAAAGVIFFNNSGYLGMCGHGTIGVVRTLHHMGRIGPGVHRIETPVGTVEATLHDDLSVSVRNVLAYRHAKDVALDVPGYGPVRGDIAWGGNWFFLISDHGQRVAGDNVAALTAYASAVREGLERAGITGANGGEIDHIELFADDPEHDSRSFVLCPGLAYDRSPCGTGTSAKLACLAADGKLAPGAVWRQASVIGSVFHASYVQAEGGIVPTIRGSAHLSAEATLLIEDDDPFRWGIV 310
                                     6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (2, 2)

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	Cis Peptide Bonds
		Glu A:53 - Pro A:54	[ RasMol ]

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