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(-) Description

Title :  HUMAN COHESIN INHIBITOR WAPL
 
Authors :  D. R. Tomchick, H. Yu, Z. Ouyang
Date :  16 Apr 13  (Deposition) - 19 Jun 13  (Release) - 24 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.62
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Heat Repeats, Cohesin Regulator, Cell Adhesion Inhibitor, Cell Cycle, Nuclear Protein, Protein-Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Ouyang, G. Zheng, J. Song, D. M. Borek, Z. Otwinowski, C. A. Brautigam, D. R. Tomchick, S. Rankin, H. Yu
Structure Of The Human Cohesin Inhibitor Wapl.
Proc. Natl. Acad. Sci. Usa V. 110 11355 2013
PubMed-ID: 23776203  |  Reference-DOI: 10.1073/PNAS.1304594110
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - WINGS APART-LIKE PROTEIN HOMOLOG
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: WAPL C-TERMINAL DOMAIN (UNP RESIDUES 631-1190)
    Gene: WAPAL, FOE, KIAA0261, WAPL
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FRIEND OF EBNA2 PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 15)

Asymmetric Unit (2, 15)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2SO413Ligand/IonSULFATE ION
Biological Unit 1 (2, 9)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2SO47Ligand/IonSULFATE ION
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1ACT-1Ligand/IonACETATE ION
2SO46Ligand/IonSULFATE ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:737 , ARG A:738 , HOH A:1312 , ARG B:997BINDING SITE FOR RESIDUE SO4 A 1201
02AC2SOFTWAREGLY A:808 , ASP A:809 , GLY A:1173 , THR A:1174 , HOH A:1330 , HOH A:1348 , HOH A:1356BINDING SITE FOR RESIDUE SO4 A 1202
03AC3SOFTWAREGLN A:974 , ARG A:977 , ARG A:981 , ARG A:1043BINDING SITE FOR RESIDUE SO4 A 1203
04AC4SOFTWAREASN A:788 , HIS A:793 , ARG A:856BINDING SITE FOR RESIDUE SO4 A 1204
05AC5SOFTWAREHIS A:713 , GLN A:714 , GLN B:967 , LYS B:970 , TYR B:971BINDING SITE FOR RESIDUE SO4 A 1205
06AC6SOFTWAREALA A:996 , ARG A:997BINDING SITE FOR RESIDUE SO4 A 1206
07AC7SOFTWARETHR A:790 , THR A:791 , GLY A:792 , TRP A:849 , ARG A:853 , HOH A:1342BINDING SITE FOR RESIDUE SO4 A 1207
08AC8SOFTWAREPRO A:-6 , GLU A:631 , GLY A:1173 , THR A:1175 , GLY A:1176 , HOH A:1333BINDING SITE FOR RESIDUE ACT A 1208
09AC9SOFTWAREHIS A:864 , GLN A:869 , ASN A:939 , ASN A:942BINDING SITE FOR RESIDUE ACT A 1209
10BC1SOFTWAREGLN B:974 , ARG B:977 , ARG B:981 , ARG B:1043 , LYS B:1114BINDING SITE FOR RESIDUE SO4 B 1201
11BC2SOFTWARETYR B:898 , ASN B:899 , ARG B:900 , ASN B:920 , VAL B:922 , GLY B:923 , HOH B:1306BINDING SITE FOR RESIDUE SO4 B 1202
12BC3SOFTWAREALA B:996 , ARG B:997BINDING SITE FOR RESIDUE SO4 B 1203
13BC4SOFTWAREARG B:731 , GLY B:808 , ASP B:809 , GLY B:1173 , THR B:1174 , HOH B:1307BINDING SITE FOR RESIDUE SO4 B 1204
14BC5SOFTWAREARG A:997 , ASP B:737 , ARG B:738 , HOH B:1325BINDING SITE FOR RESIDUE SO4 B 1205
15BC6SOFTWAREGLN B:752 , THR B:790 , GLY B:792 , TRP B:849 , ARG B:853BINDING SITE FOR RESIDUE SO4 B 1206

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4K6J)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4K6J)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4K6J)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4K6J)

(-) Exons   (0, 0)

(no "Exon" information available for 4K6J)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:497
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhh.........hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhh.hhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh.ee...eehhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4k6j A   -7 GPLGSGRPELYTVVQHVKHFNDVVEFGENQEFTDDIEYLLSGLKSTQPLNTRCLSVISLATKCAMPSFRMHLRAHGMVAMVFKTLDDSQHHQNLSLCTAALMYILSRDRLNMDLDRASLDLMIRLLELEQLNEKDMNKIKEKIRRLCETVHNKHLDLENITTGHLAMETLLSLTSKRAGDWFKEELRLLGGLDHIVDKVKECVDHLSRDEDEEKLVASLWGAERCLRVLESVTVHNPENQSYLIAYKDSQLIVSSAKALQHCEELIQQYNRAEDSICLADSKPLPHQNVTNHVGKAVEDCMRAIIGVLLNLTNDNEWGSTKTGEQDGLIGTALNCVLQVPKYLPQEQRFDIRVLGLGLLINLVEYSARNRHCLVNMETSCQVHAVQALVQLFLERERAAQLAESKTDELIKDNKALQHAGKHMEDCIVASYTALLLGCLCQESPINVTTVREYLPEGDFSIMTEMLKKFLSFMNLTCAVGTTGQKSISRVIEYLEHC 1190
                                   632       642       652       662       672       682       692       702       712       722       732       742       752|      769       779       789       799       809       819       829       839       849       859       869       879       889       899       909       919       929       939       949       959       969       979       989       999      1009|     1038      1048      1058 ||   1113      1123      1133      1143      1153      1163      1173      1183       
                                   0|                                                                                                                      752|                                                                                                                                                                                                                                                     1009|                           1060|                                                                                    
                                  631                                                                                                                       760                                                                                                                                                                                                                                                      1029                            1106                                                                                    


Chain B from PDB  Type:PROTEIN  Length:471
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhh..........hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhh.hhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                4k6j B   -7 GPLGSGRPELYTVVQHVKHFNDVVEFGENQEFTDDIEYLLSGLKSTQPLNTRCLSVISLATKCAMPSFRMHLRAHGMVAMVFKTLDDSQHHQNLSLCTAALMYILSRDRLNMDLDRASLDLMIRLLELEQEKDMNKIKEKIRRLCETVHNKHLDLENITTGHLAMETLLSLTSKRAGDWFKEELRLLGGLDHIVDKVKECVDHLSRDEDEEKLVASLWGAERCLRVLESVTVHNPENQSYLIAYKDSQLIVSSAKALQHCEELIQQYNRAENHVGKAVEDCMRAIIGVLLNLTNDNEWGSTKTGEQDGLIGTALNCVLQVPKYLPQEQRFDIRVLGLGLLINLVEYSARNRHCLVNMETSCSFHAVQALVQLFLERERAAQLAESKTKALQHAGKHMEDCIVASYTALLLGCLCQESPINVTTVREYLPEGDFSIMTEMLKKFLSFMNLTCAVGTTGQKSISRVIEYLEHC 1190
                                   632       642       652       662       672       682       692       702       712       722       732       742       752|      771       781       791       801       811       821       831       841       851       861       871       881       891       901||     928       938       948       958       968       978       988       998      1008  ||  1037      1047      1109      1119      1129      1139      1149      1159      1169      1179      1189 
                                   0|                                                                                                                      752|                                                                                                                                         902|                                                                                       1011|                   1054|                                                                                   
                                  631                                                                                                                       762                                                                                                                                          920                                                                                        1031                    1107
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4K6J)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4K6J)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4K6J)

(-) Gene Ontology  (25, 25)

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