4K50 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   RHINOVIRUS 16 POLYMERASE ELONGATION COMPLEX (R1_FORM)

Authors :   P. Gong, O. B. Peersen

Date :   12 Apr 13 (Deposition) - 22 May 13 (Release) - 03 Jul 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.93

Chains :   Asym. Unit : A,B,C,E,F,G,I,J,K,M,N,O
Biol. Unit 1: A,B,C  (1x)
Biol. Unit 2: E,F,G  (1x)
Biol. Unit 3: I,J,K  (1x)
Biol. Unit 4: M,N,O  (1x)

Keywords :   Polymerase, Rna-Dependent Rna Polymerase, Protein-Rna Complex, Transferase-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. Gong, M. G. Kortus, J. C. Nix, R. E. Davis, O. B. Peersen
Structures Of Coxsackievirus, Rhinovirus, And Poliovirus Polymerase Elongation Complexes Solved By Engineering Rna Mediated Crystal Contacts.
Plos One V. 8 60272 2013
PubMed-ID: 23667424 | Reference-DOI: 10.1371/JOURNAL.PONE.0060272

Molecule 1 - RNA POLYMERASE 3D-POL
	Chains	:	A, E, I, M
	EC Number	:	2.7.7.48
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Fragment	:	UNP RESIDUES 1694-2153
	Organism Common	:	HRV-16
	Organism Scientific	:	HUMAN RHINOVIRUS A16
	Organism Taxid	:	31708
	Synonym	:	GENOME POLYPROTEIN

Molecule 2 - RNA (33-MER)
	Chains	:	B, F, J, N
	Engineered	:	YES
	Synthetic	:	YES

*Molecule 3 - RNA (5'-R(PGPCPCPCPGPGPAPCPGPAPGPAPGPA)-3')*
	Chains	:	C, G, K, O
	Engineered	:	YES
	Synthetic	:	YES

		1	2	3	4	5	6	7	8	9	10	11	12
Asymmetric Unit	:	A	B	C	E	F	G	I	J	K	M	N	O
Biological Unit 1 (1x)	:	A	B	C
Biological Unit 2 (1x)	:				E	F	G
Biological Unit 3 (1x)	:							I	J	K
Biological Unit 4 (1x)	:										M	N	O

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 26)

No.	Name	Count	Type	Full Name
1	ACT	22	Ligand/Ion	ACETATE ION
2	GOL	3	Ligand/Ion	GLYCEROL
3	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 8)

No.	Name	Count	Type	Full Name
1	ACT	6	Ligand/Ion	ACETATE ION
2	GOL	1	Ligand/Ion	GLYCEROL
3	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (1, 6)

No.	Name	Count	Type	Full Name
1	ACT	6	Ligand/Ion	ACETATE ION
2	GOL	-1	Ligand/Ion	GLYCEROL
3	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 3 (2, 9)

No.	Name	Count	Type	Full Name
1	ACT	7	Ligand/Ion	ACETATE ION
2	GOL	2	Ligand/Ion	GLYCEROL
3	SO4	-1	Ligand/Ion	SULFATE ION

Biological Unit 4 (1, 3)

No.	Name	Count	Type	Full Name
1	ACT	3	Ligand/Ion	ACETATE ION
2	GOL	-1	Ligand/Ion	GLYCEROL
3	SO4	-1	Ligand/Ion	SULFATE ION

Asymmetric Unit (26, 26)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	MET A:154 , SER A:179 , ASP A:183 , PHE A:187 , CYS A:289 , SER A:290 , HOH A:614 , HOH A:663	BINDING SITE FOR RESIDUE GOL A 501
02	AC2	SOFTWARE	ARG A:163 , LYS A:164	BINDING SITE FOR RESIDUE ACT A 502
03	AC3	SOFTWARE	LYS A:336 , ASP A:338 , MET A:339 , PHE A:362 , HOH A:694	BINDING SITE FOR RESIDUE ACT A 503
04	AC4	SOFTWARE	LYS A:405 , PRO A:406 , SER A:407	BINDING SITE FOR RESIDUE SO4 A 504
05	AC5	SOFTWARE	CYS A:68 , SER A:69 , ASN A:71	BINDING SITE FOR RESIDUE ACT A 505
06	AC6	SOFTWARE	GLY A:124 , LYS A:126 , HOH A:635 , G B:599	BINDING SITE FOR RESIDUE ACT A 506
07	AC7	SOFTWARE	HIS A:199 , GLY A:291 , ILE A:294 , HOH A:684 , HOH A:685 , U B:601 , C B:602	BINDING SITE FOR RESIDUE ACT B 701
08	AC8	SOFTWARE	G B:600 , A C:701	BINDING SITE FOR RESIDUE ACT B 702
09	AC9	SOFTWARE	CYS E:212 , ASP E:213 , THR E:216 , PHE E:217 , LYS E:220	BINDING SITE FOR RESIDUE ACT E 501
10	BC1	SOFTWARE	ARG E:163 , LYS E:164 , LYS E:167	BINDING SITE FOR RESIDUE ACT E 502
11	BC2	SOFTWARE	MET E:154 , SER E:179 , CYS E:289 , SER E:290	BINDING SITE FOR RESIDUE ACT E 503
12	BC3	SOFTWARE	VAL E:121 , GLY E:124 , LYS E:126 , C F:597	BINDING SITE FOR RESIDUE ACT E 504
13	BC4	SOFTWARE	PHE E:195 , HIS E:199 , GLY E:291 , ILE E:294 , HOH E:654 , HOH E:655 , U F:601 , C F:602 , HOH F:810	BINDING SITE FOR RESIDUE ACT F 701
14	BC5	SOFTWARE	ARG E:174 , G F:600	BINDING SITE FOR RESIDUE ACT F 702
15	BC6	SOFTWARE	LYS I:336 , LEU I:337 , ASP I:338 , MET I:339 , PHE I:362	BINDING SITE FOR RESIDUE ACT I 501
16	BC7	SOFTWARE	VAL I:12 , LYS I:271 , TYR I:278	BINDING SITE FOR RESIDUE GOL I 502
17	BC8	SOFTWARE	VAL E:438 , SER E:439 , ARG E:442 , HIS I:8	BINDING SITE FOR RESIDUE ACT I 503
18	BC9	SOFTWARE	VAL I:121 , LYS I:126 , HOH I:630 , G J:599	BINDING SITE FOR RESIDUE ACT I 504
19	CC1	SOFTWARE	MET I:154 , SER I:179 , ASP I:183 , PHE I:187 , CYS I:289 , SER I:290 , HOH I:609 , HOH I:610	BINDING SITE FOR RESIDUE GOL I 505
20	CC2	SOFTWARE	ARG I:163 , LYS I:164 , LYS I:167 , HOH I:636 , HOH I:642	BINDING SITE FOR RESIDUE ACT I 506
21	CC3	SOFTWARE	LYS I:405 , PRO I:406 , SER I:407	BINDING SITE FOR RESIDUE ACT I 507
22	CC4	SOFTWARE	PHE I:195 , HIS I:199 , GLY I:291 , ILE I:294 , U J:601 , C J:602 , HOH J:806	BINDING SITE FOR RESIDUE ACT J 701
23	CC5	SOFTWARE	G J:600 , A K:701	BINDING SITE FOR RESIDUE ACT K 801
24	CC6	SOFTWARE	MET M:154 , SER M:179 , CYS M:289 , SER M:290	BINDING SITE FOR RESIDUE ACT M 501
25	CC7	SOFTWARE	CYS M:212 , ASP M:213 , THR M:216 , PHE M:217 , LYS M:220	BINDING SITE FOR RESIDUE ACT M 502
26	CC8	SOFTWARE	HIS M:199 , GLY M:291 , ILE M:294 , U N:601 , C N:602	BINDING SITE FOR RESIDUE ACT M 503

(no "SS Bond" information available for 4K50)

Asymmetric Unit

No.	Residues
1	Tyr A:118	-	Pro A:119
2	Tyr E:118	-	Pro E:119
3	Tyr I:118	-	Pro I:119
4	Tyr M:118	-	Pro M:119

(no "SAP(SNP)/Variant" information available for 4K50)

(no "PROSITE Motif" information available for 4K50)

(no "Exon" information available for 4K50)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:460
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4k50a_ A: Viral RNA polymerase                                                                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.hhhh............ee...........ee............hhhhhhhhhh........hhhhhhhhhhhhhhhhh........hhhhhhhh...............hhhhh..hhhhhh......hhhhhhhhhhhh....eeeee...eehhhhhh.....eeee.hhhhhhhhhhhhhhhhhhhhhh...........hhhhhh.hhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhhhh......hhhhheeeeee..eeeeee........hhhhhhhhhhhhhhhhhhhhhh...hhhhheeeee..eeeeee....hhhhhhhhhhhhh..eee.hhh................eeee.......eeee.hhhhhhhhhhee.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhh....hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k50 A   1 GQIQISKHVKDVGLPSIHTPTKTKLQPSVFYDIFPGSKEPAVLTEKDPRLKVDFDSALFSKYKGNTECSLNEHIQVAVAHYSAQLATLDIDPQPIAMEDSVFGMDGLEALDLNTSAGYPYVTLGIKKKDLINNKTKDISKLKLALDKYDVDLPMITFLKDELRKKDKIAAGKTRVIEASSINDTILFRTVYGNLFSKFHLNPGVVTGCAVGCDPETFWSKIPLMLDGDCIMAFDYTNYDGSIHPIWFKALGMVLDNLSFNPTLINRLCNSKHIFKSTYYEVEGGVPSGCSGTSIFNSMINNIIIRTLVLDAYKHIDLDKLKIIAYGDDVIFSYKYKLDMEAIAKEGQKYGLTITPADKSSEFKELDYGNVTFLKRGFRQDDKYKFLIHPTFPVEEIYESIRWTKKPSQMQEHVLSLCHLMWHNGPEIYKDFETKIRSVSAGRALYIPPYELLRHEWYEKF 460
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460

Chain B from PDB  Type:DNA/RNA  Length:33
                                                                 
                 4k50 B 581 AGGAGAUGAAAGUCUCCAGGUCUCUCGUCCGGA 613
                                   590       600       610

Chain C from PDB  Type:RNA  Length:14
                                              
                 4k50 C 688 GCCCGGACGAGAGA 701
                                   697

Chain E from PDB  Type:PROTEIN  Length:460
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4k50e_ E: Viral RNA polymerase                                                                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.hhhh............ee...........ee............hhhhhhhhhh........hhhhhhhhhhhhhhhhh........hhhhhhhh...............hhhhh..hhhhhh......hhhhhhhhhhhh....eeeee...eehhhhh......eeee.hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhhhh......hhhhheeeee...eeeeee........hhhhhhhhhhhhhhhhhhhhhh...hhhhheeeee..eeeeee....hhhhhhhhhhhhh..eee.hhh................eeee.......eeee.hhhhhhhhh.ee.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhh....hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k50 E   1 GQIQISKHVKDVGLPSIHTPTKTKLQPSVFYDIFPGSKEPAVLTEKDPRLKVDFDSALFSKYKGNTECSLNEHIQVAVAHYSAQLATLDIDPQPIAMEDSVFGMDGLEALDLNTSAGYPYVTLGIKKKDLINNKTKDISKLKLALDKYDVDLPMITFLKDELRKKDKIAAGKTRVIEASSINDTILFRTVYGNLFSKFHLNPGVVTGCAVGCDPETFWSKIPLMLDGDCIMAFDYTNYDGSIHPIWFKALGMVLDNLSFNPTLINRLCNSKHIFKSTYYEVEGGVPSGCSGTSIFNSMINNIIIRTLVLDAYKHIDLDKLKIIAYGDDVIFSYKYKLDMEAIAKEGQKYGLTITPADKSSEFKELDYGNVTFLKRGFRQDDKYKFLIHPTFPVEEIYESIRWTKKPSQMQEHVLSLCHLMWHNGPEIYKDFETKIRSVSAGRALYIPPYELLRHEWYEKF 460
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460

Chain F from PDB  Type:RNA  Length:31
                                                               
                 4k50 F 582 GGAGAUGAAAGUCUCCAGGUCUCUCGUCCGG 612
                                   591       601       611

Chain G from PDB  Type:RNA  Length:14
                                              
                 4k50 G 688 GCCCGGACGAGAGA 701
                                   697

Chain I from PDB  Type:PROTEIN  Length:460
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4k50i_ I: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.hhhh............ee...........ee............hhhhhhhhhh........hhhhhhhhhhhhhhhhh........hhhhhhhh...............hhhhh..hhhhh.......hhhhhhhhhhhh....eeeee...eehhhhhh.....eeee.hhhhhhhhhhhhhhhhhhhhh............hhhhhh.hhhhhh...eeeeeee..hhhhhhhhhhhhhhhhhhhh......hhhhheeeee...eeeeee........hhhhhhhhhhhhhhhhhhhhhh...hhhhheeeee..eeeeee....hhhhhhhhhhhhh..eee.hhh................eeee.......eeee.hhhhhhhhh.ee.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhh....hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k50 I   1 GQIQISKHVKDVGLPSIHTPTKTKLQPSVFYDIFPGSKEPAVLTEKDPRLKVDFDSALFSKYKGNTECSLNEHIQVAVAHYSAQLATLDIDPQPIAMEDSVFGMDGLEALDLNTSAGYPYVTLGIKKKDLINNKTKDISKLKLALDKYDVDLPMITFLKDELRKKDKIAAGKTRVIEASSINDTILFRTVYGNLFSKFHLNPGVVTGCAVGCDPETFWSKIPLMLDGDCIMAFDYTNYDGSIHPIWFKALGMVLDNLSFNPTLINRLCNSKHIFKSTYYEVEGGVPSGCSGTSIFNSMINNIIIRTLVLDAYKHIDLDKLKIIAYGDDVIFSYKYKLDMEAIAKEGQKYGLTITPADKSSEFKELDYGNVTFLKRGFRQDDKYKFLIHPTFPVEEIYESIRWTKKPSQMQEHVLSLCHLMWHNGPEIYKDFETKIRSVSAGRALYIPPYELLRHEWYEKF 460
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460

Chain J from PDB  Type:DNA/RNA  Length:33
                                                                 
                 4k50 J 581 AGGAGAUGAAAGUCUCCAGGUCUCUCGUCCGGA 613
                                   590       600       610

Chain K from PDB  Type:RNA  Length:14
                                              
                 4k50 K 688 GCCCGGACGAGAGA 701
                                   697

Chain M from PDB  Type:PROTEIN  Length:460
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains d4k50m_ M: Viral RNA polymerase                                                                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.hhhh............ee...........ee............hhhhhhhhhh........hhhhhhhhhhhhhhhhh........hhhhhhhh...............hhhhh..hhhhhh......hhhhhhhhhhhh....eeeee...eehhhhh......eeee.hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhh...eeeeeeee.hhhhhhhhhhhhhhhhhhhh......hhhhheeeee...eeeeee........hhhhhhhhhhhhhhhhhhhhhh...hhhhheeeee..eeeeee....hhhhhhhh......eeee.hhh...........ee..eeeee.......eeee.hhhhhhhhhhee.hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhhh...hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k50 M   1 GQIQISKHVKDVGLPSIHTPTKTKLQPSVFYDIFPGSKEPAVLTEKDPRLKVDFDSALFSKYKGNTECSLNEHIQVAVAHYSAQLATLDIDPQPIAMEDSVFGMDGLEALDLNTSAGYPYVTLGIKKKDLINNKTKDISKLKLALDKYDVDLPMITFLKDELRKKDKIAAGKTRVIEASSINDTILFRTVYGNLFSKFHLNPGVVTGCAVGCDPETFWSKIPLMLDGDCIMAFDYTNYDGSIHPIWFKALGMVLDNLSFNPTLINRLCNSKHIFKSTYYEVEGGVPSGCSGTSIFNSMINNIIIRTLVLDAYKHIDLDKLKIIAYGDDVIFSYKYKLDMEAIAKEGQKYGLTITPADKSSEFKELDYGNVTFLKRGFRQDDKYKFLIHPTFPVEEIYESIRWTKKPSQMQEHVLSLCHLMWHNGPEIYKDFETKIRSVSAGRALYIPPYELLRHEWYEKF 460
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460

Chain N from PDB  Type:DNA/RNA  Length:32
                                                                
                 4k50 N 582 GGAGAUGAAAGUCUCCAGGUCUCUCGUCCGGA 613
                                   591       601       611

Chain O from PDB  Type:RNA  Length:14
                                              
                 4k50 O 688 GCCCGGACGAGAGA 701
                                   697

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Multi-domain proteins (alpha and beta) (2421)

Fold: DNA/RNA polymerases (850)

Superfamily: DNA/RNA polymerases (850)

Family: RNA-dependent RNA-polymerase (253)

Protein domain: automated matches (100)

Human rhinovirus a16 [TaxId: 31708] (1)

d4k50i_

Protein domain: Viral RNA polymerase (148)

Human rhinovirus 16 [TaxId: 31708] (2)

2a	d4k50a_	A:
2b	d4k50e_	E:
2c	d4k50m_	M:

(no "CATH Domain" information available for 4K50)

(no "Pfam Domain" information available for 4K50)

Asymmetric Unit(hide GO term definitions)

Asymmetric Unit
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	Cis Peptide Bonds
		Tyr A:118 - Pro A:119	[ RasMol ]
		Tyr E:118 - Pro E:119	[ RasMol ]
		Tyr I:118 - Pro I:119	[ RasMol ]
		Tyr M:118 - Pro M:119	[ RasMol ]

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	4k50
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	POLG_HRV16 \| Q82122
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	2.7.7.48
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	POLG_HRV16 \| Q82122
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	POLG_HRV16 \| Q82122	:	1aym 1ayn 1c8m 1d3e 1ncr 1nd2 1nd3 1qju 1qjx 1qjy 1tp7 1xr7

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 26)

Sites (26, 26)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 4)

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Pfam Domains (0, 0)

Gene Ontology (49, 49)

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Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File