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(-) Description

Title :  PEPTIDOGLYCAN O-ACETYLESTERASE IN ACTION, 30 MIN
 
Authors :  A. H. Williams, I. Gomperts Boneca
Date :  11 Apr 13  (Deposition) - 03 Sep 14  (Release) - 22 Oct 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.16
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Alpha/Beta Fold, Peptidoglycan Hydrolase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. H. Williams, F. J. Veyrier, M. Bonis, Y. Michaud, B. Raynal, M. K. Taha, S. W. White, A. Haouz, I. G. Boneca
Visualization Of A Substrate-Induced Productive Conformatio Of The Catalytic Triad Of The Neisseria Meningitidis Peptidoglycan O-Acetylesterase Reveals Mechanistic Conservation In Sgnh Esterase Family Members.
Acta Crystallogr. , Sect. D V. 70 2631 2014
PubMed-ID: 25286847  |  Reference-DOI: 10.1107/S1399004714016770

(-) Compounds

Molecule 1 - GDSL-LIKE LIPASE/ACYLHYDROLASE FAMILY PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX-4T1
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: NEISSERIA MENINGITIDIS, NM4119_1198
    Organism Scientific: NEISSERIA MENINGITIDIS
    Organism Taxid: 1095679
    Strain: MC58

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1EPE3Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1EPE2Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:135 , ARG A:319 , THR A:324 , HOH A:502 , HOH A:582 , HOH A:619 , HOH A:660 , ASN B:185 , THR B:186BINDING SITE FOR RESIDUE EPE A 401
2AC2SOFTWAREGLY A:184 , THR A:186 , THR B:135 , ARG B:319 , THR B:324 , HOH B:523 , HOH B:584BINDING SITE FOR RESIDUE EPE B 401
3AC3SOFTWAREASN A:111 , LYS B:60 , GLU B:70 , THR B:71 , ARG B:73 , HOH B:631BINDING SITE FOR RESIDUE EPE B 402

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:316 -A:352
2B:316 -B:352

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Leu A:203 -Pro A:204
2Leu B:203 -Pro B:204
3Leu B:313 -Gly B:314

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4K3U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4K3U)

(-) Exons   (0, 0)

(no "Exon" information available for 4K3U)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:350
                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..hhhhhhhhhhhhhhhh....eeeeeeeehhhhhhhhhhhhhhhhhhhhhh..eeeee............eeeee..eeee............eeee....eeeeeee......eeeeeeeeee.....eeee..eeee......eeeeeeee..eeeee...eeeeeeeee....eeeeeeee....hhhhhhhh..hhhhhhhh....eeeee...hhhhh...hhhhhhhhhhhhhhhhhhhh...eeeeee.................hhhhhhhhhhhhhhhh..eeeehhhhhh...hhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k3u A  44 GLLTDYGNASASPWMKKLQSVAQGSGETFRILQIGDSHTAGDFFTDSLRKRLQKTWGDGGIGWVYPANVKGQRMAAVRHNGNWQSLTSRNNTGDFPLGGILAHTGSGGSMTLTASDGIASKQRVSLFAKPLLAEQTLTVNGNTVSANGGGWQVLDTGAALPLTIHTEMPWDIGFINIENPAGGITVSAMGINGAQLTQWSKWRADRMNDLAQTGADLVILSYGTNEAFNNNIDIADTEQKWLDTVRQIRDSLPAAGILIIGAPESLKNTLGVCGTRPVRLTEVQQMQRRVARQGQTMFWSWQNAMGGICSMKNWLNQGWAAKDGVHFSAKGYRRAAEMLADSLEELVRSA 393
                                    53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393


Chain B from PDB  Type:PROTEIN  Length:349
                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee..hhhhhhhhhhhhhhhhh...eeeeeeeehhhhhhhhhhhhhhhhhhhhhh..eeeee............eeeee..eeee............eeee....eeeeeee......eeeeeeeeee.....eeee..eeee......eeeeeeee..eeeee...eeeeeeeee....eeeeeeee....hhhhhhhhhhhhhhhhhhh...eeeee.hhhhhh....hhhhhhhhhhhhhhhhhhhh...eeeeee.................hhhhhhhhhhhhhhhh..eeeehhhhhh...hhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k3u B  45 LLTDYGNASASPWMKKLQSVAQGSGETFRILQIGDSHTAGDFFTDSLRKRLQKTWGDGGIGWVYPANVKGQRMAAVRHNGNWQSLTSRNNTGDFPLGGILAHTGSGGSMTLTASDGIASKQRVSLFAKPLLAEQTLTVNGNTVSANGGGWQVLDTGAALPLTIHTEMPWDIGFINIENPAGGITVSAMGINGAQLTQWSKWRADRMNDLAQTGADLVILSYGTNEAFNNNIDIADTEQKWLDTVRQIRDSLPAAGILIIGAPESLKNTLGVCGTRPVRLTEVQQMQRRVARQGQTMFWSWQNAMGGICSMKNWLNQGWAAKDGVHFSAKGYRRAAEMLADSLEELVRSA 393
                                    54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4K3U)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4K3U)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4K3U)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4K3U)

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