4K35 - JenaLib

Title :   THE STRUCTURE OF A GLYCOSIDE HYDROLASE FAMILY 81 ENDO-[BETA]-1,3-GLUCANASE

Authors :   Z. Q. Jiang, P. Zhou, Z. Z. Chen, Q. J. Yan, S. Q. Yang, R. Hilgenfeld

Date :   10 Apr 13 (Deposition) - 02 Oct 13 (Release) - 02 Oct 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: A,B  (1x)

Keywords :   Glucoside Hydrolases Family 81, Endo-Beta-1, 3-Glucanase, Rhzmucor Miehei, Supersandwich, Beta-1, 3-Glucanase, Extracellular, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. Zhou, Z. Z. Chen, Q. J. Yan, S. Q. Yang, R. Hilgenfeld, Z. Q. Jiang
The Structure Of A Glycoside Hydrolase Family 81 Endo-[Beta]-1, 3-Glucanase
Acta Crystallogr. , Sect. D V. 69 2027 2013
PubMed-ID: 18802694 | Reference-DOI: 10.1107/S090744491301799X

Compounds

Molecule 1 - GLYCOSIDE HYDROLASE FAMILY 81 ENDO-BETA-1,3-GLUCANASE
	Chains	:	A, B
	EC Number	:	3.2.1.39
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	RHIZOMUCOR MIEHEI
	Organism Scientific	:	RHIZOMUCOR MIEHEI
	Organism Taxid	:	4839
	Strain	:	CAU432

Structural Features

Chains, Units

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (3, 31)

Asymmetric Unit (3, 31)

No.	Name	Count	Type	Full Name
1	MPD	1	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
2	MSE	26	Mod. Amino Acid	SELENOMETHIONINE
3	TRS	4	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Biological Unit 1 (2, 15)

No.	Name	Count	Type	Full Name
1	MPD	-1	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
2	MSE	13	Mod. Amino Acid	SELENOMETHIONINE
3	TRS	2	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Biological Unit 2 (3, 16)

No.	Name	Count	Type	Full Name
1	MPD	1	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
2	MSE	13	Mod. Amino Acid	SELENOMETHIONINE
3	TRS	2	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Biological Unit 3 (3, 31)

No.	Name	Count	Type	Full Name
1	MPD	1	Ligand/Ion	(4S)-2-METHYL-2,4-PENTANEDIOL
2	MSE	26	Mod. Amino Acid	SELENOMETHIONINE
3	TRS	4	Ligand/Ion	2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

Sites (5, 5)

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TYR A:386 , PHE A:468 , ASP A:475 , TYR A:478 , HIS A:479 , GLU A:557 , HOH A:1091 , HOH A:1454	BINDING SITE FOR RESIDUE TRS A 801
2	AC2	SOFTWARE	ASP A:98 , GLU A:634 , THR A:672 , HOH A:1081 , HOH A:1094	BINDING SITE FOR RESIDUE TRS A 802
3	AC3	SOFTWARE	TYR B:386 , PHE B:468 , ASP B:475 , TYR B:478 , HIS B:479 , GLU B:557 , TYR B:628 , HOH B:954 , HOH B:1398	BINDING SITE FOR RESIDUE TRS B 801
4	AC4	SOFTWARE	GLU B:634 , THR B:672 , HOH B:1119 , HOH B:1180	BINDING SITE FOR RESIDUE TRS B 802
5	AC5	SOFTWARE	ILE A:687 , PRO A:719 , PRO B:655 , ILE B:687 , HIS B:720 , HOH B:1524	BINDING SITE FOR RESIDUE MPD B 803

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:720
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhh..ee......................hhhhhh.hhhhh.ee.....eeee.........eeee.....eee..............eee......eeeee.hhh....eeeeeeee..eeeeeeee..eeeeeeeeeee.....eeeeeeee.eeee....eeeeee..........eeee.eeeeee......eeeeee.....eeeeeee..eeee...eeeeeeeee..hhhhhhhhhhh....eeeeeeeeee.....eeeeeeeee.......eeeehhhhhhhh.....eeeeeeee.....eeeeee..eeeeee...............hhhhhhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh......eeee....eeee....hhhhh.....hhhhhhhhh.hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.............ee....ee..............ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhh.....eee..eee.......hhhhhhhhhhh..hhhhhhh..hhhhhhhhhhhh...hhhhh..hhhhhhhhhhh..hhhhhhhhhh........hhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4k35 A   5 GDDLFVPVSNFDPKSIFPEIKHPFEPmYANTENGKIVPTNSWISNLFYPSADNLAPTTPDPYTLRLLDGYGGNPGLTIRQPSAKVLGSYPPTNDVPYTDAGYmINSVVVDLRLTSSEWSDVVPDRQVTDWDHLSANLRLSTPQDSNSYIDFPIVRGmAYITANYNNLTPQFLSQHAIISVEADEKKSDDNTSTFSGRKFKITmNDDPTSTFIIYSLGDKPLELRKQDNSNLVASKPYTGVIRVAKLPAPEFETLLDASRAVWPTGGDISARSDDNNGASYTIKWKTNSNEAPLLTYAYAHHLTSIDDSNVKRTDmTLQSATKGPmTALVGNEWTLRETELSPVEWLPLQAAPNPTTINEImTEINKDIASNYTQETAKEDNYFSGKGLQKFAmLALILNKSDQTQLRNPELAQIALDKLKAAFLPYLQNEQADPFRYDTLYKGIVAKAGLPTSmGGTDDLSAEFGHSYYSDHHYHQGYFVVTAAIIHHLDPTWNADRLKAWTEALIRDVNNANDGDEYFAAFRNWDWFAGHSWAGGIKPDGALDGRDQESVPESVNFYWGAKLWGLATGNTPLTKLASLQLAVTKRTTYEYFWmLDGNKNRPENIVRNKVIGIYFEQKTDYTTYFGRFLEYIHGIQQLPmTPELmEYIRTPEFVSQEWDEKLGAIAPTVQSPWAGVLYLNYAIINPAEAYPALRKVQmDDGQTRSYSLYLTATRPHFFRR 724
                                    14        24      | 34        44        54        64        74        84        94       104  |    114       124       134       144       154      |164       174       184       194       204  |    214       224       234       244       254       264       274       284       294       304       314    |  324    |  334       344       354       364|      374       384       394  |    404       414       424       434       444       454   |   464       474       484       494       504       514       524       534       544       554       564       574       584       594   |   604       614       624       634       644    |  654       664       674       684       694       704       714       724
                                                     31-MSE                                                                     107-MSE                                               161-MSE                                       207-MSE                                                                                                         319-MSE   329-MSE                             365-MSE                         397-MSE                                                      458-MSE                                                                                                                                     598-MSE                                       644-MSE|                                                  702-MSE                  
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              649-MSE

Chain B from PDB  Type:PROTEIN  Length:713
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhh..ee......................hhhhhh.hhhhh.ee.....eeee.........eeee.....eee.......eee......eeeee.hhh....eeeeeeee..eeeeeeee..eeeeeeeeeee.....eeeeeeee.eeee....eeeeee..........eeee.eeeeee......eeeeee.....eeeeeee..eeee...eeeeeeeee..hhhhhhhhhhh....eeeeeeeeee.....eeeeeeeee.......eeeehhhhhhhhhhhhheeeeeeee.....eeeeee..eeeeee...............hhhhhhhhhhhhhhhhh.hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh......eeee....eeee....hhhhh.....hhhhhhhhh.hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.............ee....ee..............ee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhh.....eee..eee.......hhhhhhhhhhh..hhhhhhh..hhhhhhhhhhhh...hhhhh..hhhhhhhhhhh..hhhhhhhhhh........hhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k35 B   5 GDDLFVPVSNFDPKSIFPEIKHPFEPmYANTENGKIVPTNSWISNLFYPSADNLAPTTPDPYTLRLLDGYGGNPGLTIRQPSAKVLGSYPPTAGYmINSVVVDLRLTSSEWSDVVPDRQVTDWDHLSANLRLSTPQDSNSYIDFPIVRGmAYITANYNNLTPQFLSQHAIISVEADEKKSDDNTSTFSGRKFKITmNDDPTSTFIIYSLGDKPLELRKQDNSNLVASKPYTGVIRVAKLPAPEFETLLDASRAVWPTGGDISARSDDNNGASYTIKWKTNSNEAPLLTYAYAHHLTSIDDSNVKRTDmTLQSATKGPmTALVGNEWTLRETELSPVEWLPLQAAPNPTTINEImTEINKDIASNYTQETAKEDNYFSGKGLQKFAmLALILNKSDQTQLRNPELAQIALDKLKAAFLPYLQNEQADPFRYDTLYKGIVAKAGLPTSmGGTDDLSAEFGHSYYSDHHYHQGYFVVTAAIIHHLDPTWNADRLKAWTEALIRDVNNANDGDEYFAAFRNWDWFAGHSWAGGIKPDGALDGRDQESVPESVNFYWGAKLWGLATGNTPLTKLASLQLAVTKRTTYEYFWmLDGNKNRPENIVRNKVIGIYFEQKTDYTTYFGRFLEYIHGIQQLPmTPELmEYIRTPEFVSQEWDEKLGAIAPTVQSPWAGVLYLNYAIINPAEAYPALRKVQmDDGQTRSYSLYLTATRPHFFRR 724
                                    14        24      | 34        44        54        64        74        84        94 ||  | 111       121       131       141       151       161       171       181       191       201     | 211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361   |   371       381       391     | 401       411       421       431       441       451      |461       471       481       491       501       511       521       531       541       551       561       571       581       591      |601       611       621       631       641  |    651       661       671       681       691       701|      711       721   
                                                     31-MSE                                                           96|  |                                                   161-MSE                                       207-MSE                                                                                                         319-MSE   329-MSE                             365-MSE                         397-MSE                                                      458-MSE                                                                                                                                     598-MSE                                       644-MSE|                                                  702-MSE                  
                                                                                                                      104  |                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           649-MSE                                                                       
                                                                                                                         107-MSE

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (2, 2)

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