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(-) Description

Title :  CRYSTAL STRUCTURE OF FGF RECEPTOR 3 (FGFR3) KINASE DOMAIN HARBORING THE K650E MUTATION, A GAIN-OF-FUNCTION MUTATION RESPONSIBLE FOR THANATOPHORIC DYSPLASIA TYPE II AND SPERMATOCYTIC SEMINOMA
 
Authors :  Z. Huang, H. Chen, M. Mohammadi
Date :  10 Apr 13  (Deposition) - 11 Sep 13  (Release) - 28 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.34
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinase Domain Fold Consisting Of N- And C-Lobes, Receptor Tyrosine Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Huang, H. Chen, S. Blais, T. A. Neubert, X. Li, M. Mohammadi
Structural Mimicry Of A-Loop Tyrosine Phosphorylation By A Pathogenic Fgf Receptor 3 Mutation.
Structure V. 21 1889 2013
PubMed-ID: 23972473  |  Reference-DOI: 10.1016/J.STR.2013.07.017

(-) Compounds

Molecule 1 - FIBROBLAST GROWTH FACTOR RECEPTOR 3
    Chains: A
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)PLYS-S
    Expression System Taxid: 562
    Fragment: HUMAN FGF RECEPTOR 3 KINASE DOMAIN
    Gene: FGFR3, JTK4
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: FGFR-3

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1ACP1Ligand/IonPHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2MG2Ligand/IonMAGNESIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:478 , GLY A:479 , GLY A:481 , ALA A:482 , PHE A:483 , GLY A:484 , VAL A:486 , ALA A:506 , LYS A:508 , VAL A:555 , GLU A:556 , ALA A:558 , ASN A:562 , ARG A:621 , ASN A:622 , LEU A:624 , ASP A:635 , ARG A:655 , MG A:802 , MG A:803 , HOH A:928 , HOH A:933 , HOH A:939 , HOH A:940 , HOH A:941 , HOH A:942 , HOH A:943 , HOH A:944 , HOH A:963 , HOH A:966BINDING SITE FOR RESIDUE ACP A 801
2AC2SOFTWAREASN A:622 , ASP A:635 , ACP A:801 , HOH A:943 , HOH A:944BINDING SITE FOR RESIDUE MG A 802
3AC3SOFTWAREARG A:655 , ACP A:801 , HOH A:939 , HOH A:940 , HOH A:941 , HOH A:963BINDING SITE FOR RESIDUE MG A 803

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4K33)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys A:501 -Pro A:502

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4K33)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4K33)

(-) Exons   (0, 0)

(no "Exon" information available for 4K33)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:293
                                                                                                                                                                                                                                                                                                                                     
               SCOP domains d4k33a_ A: automated matches                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhh.eeeeeeeee...eeeeeeee...........eeeeeeee....hhhhhhhhhhhhhhhhhhh.......eeeee......eeeee.....hhhhhhhh................hhhhhhhhhhhhhhhhhhhhhh.ee....hhh.eee.....eee......ee......ee.......hhhhhhhhhhhhheehhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k33 A 459 LPADPKWELSRARLTLGKPLGEGAFGQVVMAEAIGIDKDRAAKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGACTQGGPLYVLVEYAAKGNLREFLRARRPPGLDYSFDTSEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNLDYYKETTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTHDLYMIMRECWHAAPSQRPTFKQLVEDLDRVLTVT 755
                                   468       478       488       498       508       518       528       538       548       558       568       578   ||  592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752   
                                                                                                                                                     582|                                                                                                                                                                        
                                                                                                                                                      587
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4K33)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4K33)

(-) Gene Ontology  (55, 55)

Asymmetric/Biological Unit(hide GO term definitions)

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    Lys A:501 - Pro A:502   [ RasMol ]  
 

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  4k33
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  FGFR3_HUMAN | P22607
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  2.7.10.1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FGFR3_HUMAN | P22607: 1ry7 2lzl

(-) Related Entries Specified in the PDB File

2psq UNPHOSPHORYLATED UNACTIVATED WILD TYPE FGFR2 KINASE DOMAIN
2pvf PHOSPHORYLATED ACTIVATED FGFR2 KINASE DOMAIN
4j97 FGFR2 KINASE DOMAIN HARBORING THE PATHOGENIC K659E MUTATION