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(-) Description

Title :  PILOTIN/SECRETIN PEPTIDE COMPLEX
 
Authors :  S. Rehman, R. W. Pickersgill
Date :  04 Apr 13  (Deposition) - 15 May 13  (Release) - 24 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Biol. Unit 2:  A,B  (1x)
Keywords :  Type Ii Secretion System, Pilotin-Secretin Complex, Protein Transport, Outer Membrane, Dickeya Dadantii (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Rehman, S. Gu, V. E. Shevchik, R. W. Pickersgill
Anatomy Of Secretin Binding To The Dickeya Dadantii Type Ii Secretion System Pilotin.
Acta Crystallogr. , Sect. D V. 69 1381 2013
PubMed-ID: 23897461  |  Reference-DOI: 10.1107/S0907444913007658
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - LIPOPROTEIN OUTS
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 28-133
    Gene: DDA3937_02411, OUTS, OUTS DDA3937_02411
    Organism Scientific: DICKEYA DADANTII
    Organism Taxid: 198628
    Strain: 3937
 
Molecule 2 - TYPE II SECRETION SYSTEM PROTEIN D
    Chains: B
    Engineered: YES
    Fragment: UNP RESIDUES 693-705
    Organism Scientific: DICKEYA DADANTII
    Organism Taxid: 198628
    Other Details: SYNTHETIC PEPTIDE C-TERMINAL OUTD (DICKEYA DADANTII 3937)
    Synonym: T2SS PROTEIN D, GENERAL SECRETION PATHWAY PROTEIN D, PECTIC ENZYMES SECRETION PROTEIN OUTD
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB
Biological Unit 2 (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4K0U)

(-) Sites  (0, 0)

(no "Site" information available for 4K0U)

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:61 -A:115

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4K0U)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:95
                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                 4k0u A  38 VPANEQISQLASLVAASKYLRVQCERSDLPDDGTILKTAVNVAVQKGWDTGRYQSLPQLSENLYQGLLKDGTPKATQCSSFNRTMTPFLDAMRTV 132
                                    47        57        67        77        87        97       107       117       127     


Chain B from PDB  Type:PROTEIN  Length:15
                                               
               SCOP domains --------------- SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE --------------- PROSITE
                 Transcript --------------- Transcript
                 4k0u B   1 RTFRQVQSSISDFYD  15
                                    10
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4K0U)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4K0U)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4K0U)

(-) Gene Ontology  (11, 16)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        OUTS_DICD3 | Q01567: 3utk

(-) Related Entries Specified in the PDB File

3utk THE SAME PROTEIN COMPLEXED WITH SECRETIN PEPTIDE