4K05 - JenaLib

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Title :   CRYSTAL STRUCTURE OF A DUF1343 FAMILY PROTEIN (BF0371) FROM BACTEROIDES FRAGILIS NCTC 9343 AT 1.65 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   03 Apr 13 (Deposition) - 17 Apr 13 (Release) - 24 Dec 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.65

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: A,B  (1x)

Keywords :   Pf07075 Family Protein, Duf1343, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi- Biology, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of A Hypothetical Protein (Bf0371) From Bacteroides Fragilis Nctc 9343 At 1. 65 A Resolution
To Be Published
PubMed: search

Molecule 1 - CONSERVED HYPOTHETICAL EXPORTED PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	SPEEDET
	Expression System Strain	:	PB1
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	BF0371, BF9343_0362
	Organism Scientific	:	BACTEROIDES FRAGILIS
	Organism Taxid	:	272559
	Strain	:	NCTC 9343

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 29)

No.	Name	Count	Type	Full Name
1	1PE	1	Ligand/Ion	PENTAETHYLENE GLYCOL
2	FMT	1	Ligand/Ion	FORMIC ACID
3	K	3	Ligand/Ion	POTASSIUM ION
4	MSE	24	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 12)

No.	Name	Count	Type	Full Name
1	1PE	-1	Ligand/Ion	PENTAETHYLENE GLYCOL
2	FMT	-1	Ligand/Ion	FORMIC ACID
3	K	-1	Ligand/Ion	POTASSIUM ION
4	MSE	12	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (3, 14)

No.	Name	Count	Type	Full Name
1	1PE	1	Ligand/Ion	PENTAETHYLENE GLYCOL
2	FMT	1	Ligand/Ion	FORMIC ACID
3	K	-1	Ligand/Ion	POTASSIUM ION
4	MSE	12	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 3 (3, 26)

No.	Name	Count	Type	Full Name
1	1PE	1	Ligand/Ion	PENTAETHYLENE GLYCOL
2	FMT	1	Ligand/Ion	FORMIC ACID
3	K	-1	Ligand/Ion	POTASSIUM ION
4	MSE	24	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LEU A:78 , HIS A:79 , ALA A:81 , VAL A:84 , HOH A:794 , HOH A:952	BINDING SITE FOR RESIDUE K A 501
2	AC2	SOFTWARE	GLN B:222 , 1PE B:504 , HOH B:670	BINDING SITE FOR RESIDUE K B 501
3	AC3	SOFTWARE	LEU B:78 , HIS B:79 , ALA B:81 , VAL B:84 , HOH B:963 , HOH B:994	BINDING SITE FOR RESIDUE K B 502
4	AC4	SOFTWARE	ARG A:415 , GLN A:418 , HOH A:802 , GLY B:55 , LYS B:56 , ARG B:57 , ASN B:85	BINDING SITE FOR RESIDUE FMT B 503
5	AC5	SOFTWARE	GLU A:166 , ASN A:168 , GLY B:220 , GLU B:221 , GLN B:222 , K B:501 , HOH B:945	BINDING SITE FOR RESIDUE 1PE B 504

(no "SS Bond" information available for 4K05)

(no "Cis Peptide Bond" information available for 4K05)

(no "SAP(SNP)/Variant" information available for 4K05)

(no "PROSITE Motif" information available for 4K05)

(no "Exon" information available for 4K05)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:384
                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhh.hhhhh..eeeeee..........hhhhhhhhh...eeeeeee...................eee.hhhhh..hhhhhh...eeeee.........hhhhhhhhhhhhhhhh..eeeee................hhhhh..............hhhhhhhhhhhh.......eeeee.........hhhhhh...........hhhhhhhhhhhhhhhh...............eeee...hhhhhhhhhhh.....eeeeeeee...........eeeeeeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4k05 A  34 PRIRIKTGIEVLKEQNFKCLEGKRVGLITNPTGVDNHLISTIDILHEAPNVNLVALYGPEHGVRGDVHANDSSTGLPVYSLYGKTRKPTPEmLKDIDVLVYDIQDIGCRSFTYISTmGVAmEAAAENNKEFIVLDRPNPIGGLKIEGNVVEDGYISFVSQFKIPYLYGLTCGELALmLNGEQmLSKPCNLHVVKmKGWKRKmDYVQTGLQWIPSSPHIPHPHSAFFYPVSGILGELGYmSIGVGYTIPFQmFAARWVEAEKLADNLNRLHLPGVIFRPmHLKPFYSVGKEEHLQGVQVHIVDFNKASLSEIQFYVmQEVTALYPDRAVFDHADKERFHmFDLVSGSKEIRERFSQRNRWEDVRDYWYKDVDDFRRLSQKYYLYK 424
                                    43        53        63        73        83        93       110       120       130 |     140       150      |160|      170       180       190       200       210      |220  |    230    |  240 |     250       260       270       280       290|      300       310       320       330       340       350     | 360       370       380       390       400       410       420    
                                                                                             101|                    132-MSE                  157-MSE                                                     217-MSE |         235-MSE  |                                  279-MSE     291-MSE                     319-MSE                              356-MSE                379-MSE                                         
                                                                                              109                                                 161-MSE                                                       223-MSE            242-MSE

Chain B from PDB  Type:PROTEIN  Length:384
                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......hhhhhhhhh.hhhhh..eeeeee..........hhhhhhhhh...eeeeeee...................eee.hhhhh..hhhhhh...eeeee.........hhhhhhhhhhhhhhhh..eeeee................hhhhh..............hhhhhhhhhhhh.......eeeee.........hhhhhh.............hhhhhhhhhhhhhh...............eeee...hhhhhhhhhhh.....eeeeeeee...........eeeeeeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4k05 B  34 PRIRIKTGIEVLKEQNFKCLEGKRVGLITNPTGVDNHLISTIDILHEAPNVNLVALYGPEHGVRGDVHANDSSTGLPVYSLYGKTRKPTPEmLKDIDVLVYDIQDIGCRSFTYISTmGVAmEAAAENNKEFIVLDRPNPIGGLKIEGNVVEDGYISFVSQFKIPYLYGLTCGELALmLNGEQmLSKPCNLHVVKmKGWKRKmDYVQTGLQWIPSSPHIPHPHSAFFYPVSGILGELGYmSIGVGYTIPFQmFAARWVEAEKLADNLNRLHLPGVIFRPmHLKPFYSVGKEEHLQGVQVHIVDFNKASLSEIQFYVmQEVTALYPDRAVFDHADKERFHmFDLVSGSKEIRERFSQRNRWEDVRDYWYKDVDDFRRLSQKYYLYK 424
                                    43        53        63        73        83        93       110       120       130 |     140       150      |160|      170       180       190       200       210      |220  |    230    |  240 |     250       260       270       280       290|      300       310       320       330       340       350     | 360       370       380       390       400       410       420    
                                                                                             101|                    132-MSE                  157-MSE                                                     217-MSE |         235-MSE  |                                  279-MSE     291-MSE                     319-MSE                              356-MSE                379-MSE                                         
                                                                                              109                                                 161-MSE                                                       223-MSE            242-MSE

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Ligands, Modified Residues, Ions (4, 29)

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