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(-) Description

Title :  CRYSTAL STRUCTURE OF SLR0204, A 1,4-DIHYDROXY-2-NAPHTHOYL-COA THIOESTERASE FROM SYNECHOCYSTIS
 
Authors :  F. Furt, W. J. Allen, J. R. Widhalm, P. Madzelan, R. C. Rizzo, G. Basset, M
Date :  03 Apr 13  (Deposition) - 17 Apr 13  (Release) - 15 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Hotdog Fold, Thioesterase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Furt, W. J. Allen, J. R. Widhalm, P. Madzelan, R. C. Rizzo, G. Basset, M. A. Wilson
Functional Convergence Of Structurally Distinct Thioesterases From Cyanobacteria And Plants Involved In Phylloquinone Biosynthesis.
Acta Crystallogr. , Sect. D V. 69 1876 2013
PubMed-ID: 24100308  |  Reference-DOI: 10.1107/S0907444913015771

(-) Compounds

Molecule 1 - 1,4-DIHYDROXY-2-NAPHTHOYL-COA HYDROLASE
    Chains: A, B
    EC Number: 3.1.2.28
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: SLR0204
    Organism Scientific: SYNECHOCYSTIS SP.
    Organism Taxid: 1111708
    Strain: PCC 6803
    Synonym: DHNA-COA HYDROLASE, DHNA-COA THIOESTERASE

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1EDO1Ligand/Ion1,2-ETHANEDIOL
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA B:13 , THR B:15 , HOH B:337BINDING SITE FOR RESIDUE EDO B 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4K00)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Leu A:116 -Pro A:117
2Leu B:116 -Pro B:117

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4K00)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:137
                                                                                                                                                                         
               SCOP domains d4k00a_ A: automated matches                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee.hhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.ee..eeeeeeee........eeeeeeeeee....eeeeeeeeee.....eeeeeeeeee.ee....ee...hhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k00 A   2 GTFTYERQVYLADTDGAGVVYFNQFLQMCHEAYESWLSSEHLSLQNIISVGDFALPLVHASIDFFAPAHCGDRLLVNLTITQASAHRFCCDYEISQAESAQLLARAQTHHVCIALPERKKAPLPQPWQTAICDLDHP 138
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       


Chain B from PDB  Type:PROTEIN  Length:136
                                                                                                                                                                        
               SCOP domains d4k00b_ B: automated matches                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.hhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.ee..eeeeeeee........eeeeeeeeee....eeeeeeeeee.....eeeeeeeeee.ee....ee...hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4k00 B   3 TFTYERQVYLADTDGAGVVYFNQFLQMCHEAYESWLSSEHLSLQNIISVGDFALPLVHASIDFFAPAHCGDRLLVNLTITQASAHRFCCDYEISQAESAQLLARAQTHHVCIALPERKKAPLPQPWQTAICDLDHP 138
                                    12        22        32        42        52        62        72        82        92       102       112       122       132
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 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4K00)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4K00)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)

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4k02