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(-) Description

Title :  CRYSTAL STRUCTURE OF A SALICYLALDEHYDE DEHYDROGENASE FROM PSEUDOMONAS PUTIDA G7 COMPLEXED WITH SALICYLALDEHYDE
 
Authors :  J. B. Coitinho, R. A. P. Nagem
Date :  02 Apr 13  (Deposition) - 02 Apr 14  (Release) - 08 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.42
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Protein-Ligand Complex, Alpha/Beta Fold, Dehydrogenase, Nad+ Binding, N-Terminal 6Xhis-Tagged Protein, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. B. Coitinho, M. S. Pereira, D. M. Costa, S. L. Guimaraes, S. S. Araujo A. C. Hengge, T. A. Brandao, R. A. Nagem
Structural And Kinetic Properties Of The Aldehyde Dehydrogenase Nahf, A Broad Substrate Specificity Enzyme Fo Aldehyde Oxidation.
Biochemistry V. 55 5453 2016
PubMed-ID: 27580341  |  Reference-DOI: 10.1021/ACS.BIOCHEM.6B00614
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SALICYLALDEHYDE DEHYDROGENASE NAHF
    Chains: A
    EC Number: 1.2.1.65
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28A(TEV)
    Expression System Strain: ARCTIC EXPRESS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: NAHF
    Organism Scientific: PSEUDOMONAS PUTIDA
    Organism Taxid: 303
    Strain: G7

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric Unit (3, 10)
No.NameCountTypeFull Name
1EDO5Ligand/Ion1,2-ETHANEDIOL
2NK2Ligand/IonSALICYLALDEHYDE
3SO43Ligand/IonSULFATE ION
Biological Unit 1 (2, 16)
No.NameCountTypeFull Name
1EDO10Ligand/Ion1,2-ETHANEDIOL
2NK-1Ligand/IonSALICYLALDEHYDE
3SO46Ligand/IonSULFATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETRP A:96 , ASN A:149 , GLY A:150 , VAL A:153 , ILE A:283 , CYS A:284 , MET A:285 , TYR A:446BINDING SITE FOR RESIDUE NK A 501
02AC2SOFTWARELYS A:245 , ARG A:246 , CYS A:247 , TYR A:454 , EDO A:509 , HOH A:889BINDING SITE FOR RESIDUE NK A 502
03AC3SOFTWAREVAL A:139 , ARG A:222 , ARG A:223 , THR A:449 , LYS A:450 , GLU A:468 , HOH A:683 , HOH A:700 , HOH A:752 , HOH A:881BINDING SITE FOR RESIDUE SO4 A 503
04AC4SOFTWAREALA A:263 , ASP A:264 , ILE A:265 , ASN A:266 , ARG A:303 , ARG A:414 , HOH A:711BINDING SITE FOR RESIDUE SO4 A 504
05AC5SOFTWAREGLY A:392 , GLU A:393 , ALA A:394 , HOH A:852BINDING SITE FOR RESIDUE SO4 A 505
06AC6SOFTWAREALA A:103 , ASN A:106 , VAL A:107 , ASN A:440 , GLU A:441 , ALA A:442 , HOH A:954 , HOH A:961BINDING SITE FOR RESIDUE EDO A 506
07AC7SOFTWAREGLN A:137 , PRO A:138 , MET A:424 , ILE A:426 , HOH A:755 , HOH A:839BINDING SITE FOR RESIDUE EDO A 507
08AC8SOFTWARELYS A:219 , HIS A:243 , HOH A:635BINDING SITE FOR RESIDUE EDO A 508
09AC9SOFTWAREARG A:246 , TYR A:454 , GLY A:455 , ASP A:464 , GLU A:465 , NK A:502 , EDO A:510 , HOH A:642 , HOH A:941BINDING SITE FOR RESIDUE EDO A 509
10BC1SOFTWAREARG A:246 , GLY A:455 , ASP A:464 , EDO A:509BINDING SITE FOR RESIDUE EDO A 510

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JZ6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JZ6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JZ6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JZ6)

(-) Exons   (0, 0)

(no "Exon" information available for 4JZ6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:484
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains d4jz6a_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.eee..eee......eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh....ee.......eeeeeee....eeee......hhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhh.....eeee.....hhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhh...eeee.....eeee....hhhhhhhhhhhhhhhhhhh......eeeeehhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhh..eeee...........eeee.....hhhhh......eeeeeee.hhhhhhhhhhh.....eeeee..hhhhhhhhhhhh...eeee...............hhh.ee......hhhhhh.eeeeeee......... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jz6 A   0 HMKTKLFINNAWIDSSDQQTFERKHPVSSEVMTESANATVTDAIKAAQAAEEAFKTWKDVGPSERRRLLLKVADVMESKTPKFIEVMAMEVGASALWAGFNVHASANVFREAASLATQIQGETIPTDKAETLSMTLRQPVGPILSIVPWNGTAVLAARAIAYPLVCGNTVVFKGSEFSPATHALITQCVQEAGLPAGVLNYLNSSPDRSPEIADALISAKEIRRINFTGSTRVGSIIAQKAAQHLKRCLLELGGKSPLIVLDDADINAAVKAAVFGSFLFQGQICMSTERLVVDEKIADEFVARFVEKTERLSVGDPCLTGDCIIGPMVSPNSGERINGLFKDAIDKGAKVVCGGMAQGAVMPATILDHVKSDMRIYDEETFGPITVVIRCKGEAEAIRIANDSVYGLSSGVFGRDINRALRVGMSIEYGCVHINGSTVQNEAQAPYGGTKNTGYGRFDGRAVIDEFTELKWLTIEPFEQQYPF 483
                                     9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JZ6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JZ6)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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