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(-) Description

Title :  CRYSTAL STRUCTURE OF A GNAT SUPERFAMILY PHOSPHINOTHRICIN ACETYLTRANSFERASE (PAT) FROM SINORHIZOBIUM MELILOTI IN COMPLEX WITH ACCOA
 
Authors :  K. A. Majorek, D. R. Cooper, P. J. Porebski, K. Konina, M. Ahmed, M. Stead B. Hillerich, R. Seidel, J. B. Bonanno, S. C. Almo, W. Minor, New York Structural Genomics Research Consortium (Nysgrc)
Date :  28 Mar 13  (Deposition) - 15 May 13  (Release) - 15 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.15
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Psi-Biology, New York Structural Genomics Research Consortium, Nysgrc, Gnat, Phosphinothricin Acetyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. A. Majorek, D. R. Cooper, P. J. Porebski, K. Konina, M. Ahmed, M. Stead, B. Hillerich, R. Seidel, J. B. Bonanno, S. C. Almo, W. Minor
Crystal Structure Of A Gnat Superfamily Phosphinothricin Acetyltransferase (Pat) From Sinorhizobium Meliloti In Complex With Accoa
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ACETYLTRANSFERASE
    Chains: A, B
    EC Number: 2.3.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSGC-HIS
    Expression System Strain: BL21(DE3)-RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: R03223, SMC03840
    Organism Common: ENSIFER MELILOTI
    Organism Scientific: SINORHIZOBIUM MELILOTI
    Organism Taxid: 266834
    Strain: 1021

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 14)

Asymmetric/Biological Unit (5, 14)
No.NameCountTypeFull Name
12PE1Ligand/IonNONAETHYLENE GLYCOL
2ACO1Ligand/IonACETYL COENZYME *A
3FLC1Ligand/IonCITRATE ANION
4MSE10Mod. Amino AcidSELENOMETHIONINE
5PEG1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:90 , ARG A:95 , GLY A:96 , GLY A:100 , SER A:129 , SER A:130 , LEU A:133 , HOH A:322 , HOH A:331 , HOH A:361 , HOH A:381 , HOH A:443 , HOH A:472 , HOH A:561 , ARG B:135BINDING SITE FOR RESIDUE FLC A 201
2AC2SOFTWAREGLY A:52 , TYR A:178 , HOH A:379 , HOH A:445 , HOH A:453 , HOH A:463 , HOH A:571 , HOH A:591 , HOH A:592 , HOH A:634 , ARG B:6 , HOH B:556BINDING SITE FOR RESIDUE 2PE A 202
3AC3SOFTWAREARG A:62 , GLY B:50 , ASN B:51 , GLY B:52 , THR B:181 , HOH B:409 , HOH B:577BINDING SITE FOR RESIDUE PEG B 201
4AC4SOFTWAREARG A:135 , SER B:23 , ALA B:29 , ASP B:86 , SER B:87 , ILE B:88 , TYR B:89 , LEU B:90 , PRO B:92 , ARG B:95 , GLY B:96 , ILE B:99 , GLY B:100 , HIS B:127 , SER B:129 , SER B:130 , GLU B:175 , HOH B:321 , HOH B:349 , HOH B:352 , HOH B:379 , HOH B:545 , HOH B:564 , HOH B:565 , HOH B:602BINDING SITE FOR RESIDUE ACO B 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JXR)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Tyr A:178 -Pro A:179
2Tyr B:178 -Pro B:179

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JXR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JXR)

(-) Exons   (0, 0)

(no "Exon" information available for 4JXR)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:185
                                                                                                                                                                                                                         
               SCOP domains d4jxra_ A: automated matches                                                                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhh...eeeee.....eeeeeeeee...hhhhh.eeeeeeee.hhhh..hhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhh..eeeeeeeeeeee..eeeeeeeeeee..................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jxr A   1 mTATLRDAVAADLRSITEIYRESVLNGVATYEETPPSEAEmALRFSTITGNGYPYVVALDERGAVIGYAYASAFRNRTAYRFLVEDSIYLSPEARGKGIGKALLSELVGRCTALGFRQmIAVIGGAHPSSIALHRALGFELQGLmKATGFKHGRWLDTAFmQRPLGEGTATKPTEGVYPDTLYRS 185
                            |       10        20        30        40|       50        60        70        80        90       100       110       120       130       140    |  150       160|      170       180     
                            |                                      41-MSE                                                                       119-MSE                   145-MSE         161-MSE                    
                            1-MSE                                                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:185
                                                                                                                                                                                                                         
               SCOP domains d4jxrb_ B: automated matches                                                                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.hhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhh...eeeee.....eeeeeeeee...hhhhh.eeeeeeee.hhhh..hhhhhhhhhhhhhhhhhh..eeeeeee..hhhhhhhhhhh..eeeeeeeeeeee..eeeeeeeeeee..................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jxr B   1 mTATLRDAVAADLRSITEIYRESVLNGVATYEETPPSEAEmALRFSTITGNGYPYVVALDERGAVIGYAYASAFRNRTAYRFLVEDSIYLSPEARGKGIGKALLSELVGRCTALGFRQmIAVIGGAHPSSIALHRALGFELQGLmKATGFKHGRWLDTAFmQRPLGEGTATKPTEGVYPDTLYRS 185
                            |       10        20        30        40|       50        60        70        80        90       100       110       120       130       140    |  150       160|      170       180     
                            1-MSE                                  41-MSE                                                                       119-MSE                   145-MSE         161-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JXR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JXR)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Tyr A:178 - Pro A:179   [ RasMol ]  
    Tyr B:178 - Pro B:179   [ RasMol ]  
 

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