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(-) Description

Title :  CRYSTAL STRUCTURE OF RIIBETA(108-402) BOUND TO HE33, A N6 DI-PROPYL SUBSTITUTED CAMP ANALOG
 
Authors :  S. H. J. Brown, C. Y. Cheng, A. S. Saldanha, J. Wu, H. Cottam, B. Sankaran, S. S. Taylor
Date :  25 Mar 13  (Deposition) - 18 Sep 13  (Release) - 30 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A
Keywords :  Camp-Dependent Protein Kinase, Cyclic Nucleotide Analogs, Isoform Selectivity, Fluorescence Anisotropy, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. H. Brown, C. Y. Cheng, S. A. Saldanha, J. Wu, H. B. Cottam, B. Sankaran S. S. Taylor
Implementing Fluorescence Anisotropy Screening And Crystallographic Analysis To Define Pka Isoform-Selective Activation By Camp Analogs.
Acs Chem. Biol. V. 8 2164 2013
PubMed-ID: 23978166  |  Reference-DOI: 10.1021/CB400247T

(-) Compounds

Molecule 1 - CAMP-DEPENDENT PROTEIN KINASE TYPE II-BETA REGULATORY SUBUNIT
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PRSET
    Fragment: RIIBETA(108-402) OF CAMP-DEPENDENT PROTEIN KINASE
    Gene: PRKAR2B
    Mutation: YES
    Organism Common: BROWN RAT,RAT,RATS
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
11OR2Ligand/Ion(2R,4AR,6R,7R,7AS)-6-[6-(DIPROPYLAMINO)-9H-PURIN-9-YL]TETRAHYDRO-4H-FURO[3,2-D][1,3,2]DIOXAPHOSPHININE-2,7-DIOL 2-OXIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:208 , VAL A:210 , TYR A:213 , PHE A:219 , GLY A:220 , GLU A:221 , LEU A:222 , ALA A:223 , ARG A:230 , ALA A:231 , ILE A:234 , GLN A:377 , GLU A:380 , ARG A:381 , HOH A:627BINDING SITE FOR RESIDUE 1OR A 501
2AC2SOFTWARELYS A:174 , ILE A:302 , ILE A:321 , ILE A:339 , PHE A:348 , GLY A:349 , GLU A:350 , LEU A:351 , ALA A:352 , ARG A:359 , ALA A:360 , ALA A:361 , THR A:396 , TYR A:397 , HOH A:644BINDING SITE FOR RESIDUE 1OR A 502

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JVA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JVA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JVA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JVA)

(-) Exons   (0, 0)

(no "Exon" information available for 4JVA)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:264
                                                                                                                                                                                                                                                                                                        
               SCOP domains d4jvaa1 A:127-265 Regulatory subunit of Protein kinase A                                                                                   d4jvaa2 A:266-397 Regulatory subunit of Protein kinase A                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhh.hhhhh..hhhhhhhhhhhheeeee....eee.......eeeeeee.eeeeeeee..eeeeeeeee...ee.hhhhhhh.....eeee...eeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhheeeee....eee.......eeeeeeeeeeeeee......eeeeee....ee.hhhhhh......eeeeeeeeeeeeeehhhhhhhh..hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4jva A 127 AESRIIHPKTDDQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGVGRCVGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRKGKAVEIARCLRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATY 397
                                   136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326 ||    343       353       363       373       383       393    
                                                                                                                                                                                                                                   328|                                                             
                                                                                                                                                                                                                                    336
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JVA)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JVA)

(-) Gene Ontology  (30, 30)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        KAP3_RAT | P12369: 1cx4 3idb 3idc

(-) Related Entries Specified in the PDB File

1cx4 CRYSTAL STRUCTURE OF RIIBETA BOUND TO CAMP
4jv4 CRYSTAL STRUCTURE OF RIALPHA(91-379) BOUND TO HE33, A N6 DI -PROPYL SUBSTITUTED CAMP ANALOG