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(-) Description

Title :  CRYSTAL STRUCTURE OF DISULFIDE BOND OXIDOREDUCTASE DSBA1 FROM LEGIONELLA PNEUMOPHILA
 
Authors :  I. A. Shumilin, M. Jameson-Lee, M. Cymborowski, M. J. Domagalski, O. Ch Z. Z. Kpadeh, A. J. Yeh, P. S. Hoffman, W. F. Anderson, W. Minor, Center Structural Genomics Of Infectious Diseases (Csgid)
Date :  21 Mar 13  (Deposition) - 24 Apr 13  (Release) - 24 Apr 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.88
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Disulfide Bond Oxidoreductase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. A. Shumilin, M. Jameson-Lee, M. Cymborowski, M. J. Domagalski, O. Chertihin, Z. Z. Kpadeh, A. J. Yeh, P. S. Hoffman, W. F. Anderson, W. Minor
Crystal Structure Of Disulfide Bond Oxidoreductase Dsba1 From Legionella Pneumophila
To Be Published
PubMed: search

(-) Compounds

Molecule 1
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3) CODONPLUS RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: DSBA, LPG0123
    Organism Scientific: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA
    Organism Taxid: 272624
    Strain: PHILADELPHIA 1

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 7)

Asymmetric Unit (2, 7)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2SO44Ligand/IonSULFATE ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2SO41Ligand/IonSULFATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1GOL-1Ligand/IonGLYCEROL
2SO41Ligand/IonSULFATE ION
Biological Unit 3 (2, 3)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2SO42Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:135 , THR A:136 , LYS A:137 , HOH A:496BINDING SITE FOR RESIDUE SO4 A 301
2AC2SOFTWAREALA A:46 , GLN A:47 , SER A:173 , LEU A:174 , HOH A:451BINDING SITE FOR RESIDUE GOL A 302
3AC3SOFTWAREASP A:150 , HOH A:487 , HOH A:497 , GLY C:65 , TRP C:100 , ILE C:127 , GLN C:128 , HOH C:405 , HOH C:478BINDING SITE FOR RESIDUE GOL A 303
4AC4SOFTWARETHR B:136 , LYS B:137 , HOH B:459BINDING SITE FOR RESIDUE SO4 B 301
5AC5SOFTWAREARG A:82 , THR C:136 , LYS C:137 , HOH C:402 , HOH C:499 , HOH C:529BINDING SITE FOR RESIDUE SO4 C 301
6AC6SOFTWARELYS A:54 , ARG A:167 , HOH A:499 , LYS C:71 , SER C:201 , GLU C:202 , GOL C:303 , HOH C:496BINDING SITE FOR RESIDUE SO4 C 302
7AC7SOFTWARELYS A:111 , THR A:112 , ARG A:167 , HOH A:426 , HOH A:500 , TRP C:68 , LYS C:71 , SO4 C:302BINDING SITE FOR RESIDUE GOL C 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JRR)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Thr A:55 -Pro A:56
2Val A:183 -Pro A:184
3Thr B:55 -Pro B:56
4Val B:183 -Pro B:184
5Thr C:55 -Pro C:56
6Val C:183 -Pro C:184

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JRR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JRR)

(-) Exons   (0, 0)

(no "Exon" information available for 4JRR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:188
                                                                                                                                                                                                                            
               SCOP domains d4jrra_ A: automated matches                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.........ee........hhhhh.eeeeee...hhhhhhhhhhhhhhhhhhhhhheeeeee.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh......hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeee...eeeehhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jrr A  29 GSHMQFIEGKDYQTVASAQLSTNKDKTPLITEFFSYGCPWCYKIDAPLNDWATRMGKGAHLERVPVVFKPNWDLYAKAYYTAKTLAMSDKMNPILFKAIQEDKNPLATKQSMVDFFVAHGVDREIAKSAFENSPTIDMRVNSGMSLMAHYQINAVPAFVVNNKYKTDLQMAGSEERLFEILNYLVRKS 216
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208        


Chain B from PDB  Type:PROTEIN  Length:184
                                                                                                                                                                                                                        
               SCOP domains d4jrrb_ B: automated matches                                                                                                                                                             SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......ee..............eeeeee...hhhhhhhhhhhhhhhhhh....eeeeee.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh......hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeee...eeeehhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jrr B  34 FIEGKDYQTVASAQLSTNKDKTPLITEFFSYGCPWCYKIDAPLNDWATRMGKGAHLERVPVVFKPNWDLYAKAYYTAKTLAMSDKMNPILFKAIQEDKNPLATKQSMVDFFVAHGVDREIAKSAFENSPTIDMRVNSGMSLMAHYQINAVPAFVVNNKYKTDLQMAGSEERLFEILNYLVRKSA 217
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213    


Chain C from PDB  Type:PROTEIN  Length:185
                                                                                                                                                                                                                         
               SCOP domains d4jrrc_ C: automated matches                                                                                                                                                              SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........ee..............eeeeee...hhhhhhhhhhhhhhhhhhhhhheeeeee.....hhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh......hhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.eeee...eeeehhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jrr C  33 QFIEGKDYQTVASAQLSTNKDKTPLITEFFSYGCPWCYKIDAPLNDWATRMGKGAHLERVPVVFKPNWDLYAKAYYTAKTLAMSDKMNPILFKAIQEDKNPLATKQSMVDFFVAHGVDREIAKSAFENSPTIDMRVNSGMSLMAHYQINAVPAFVVNNKYKTDLQMAGSEERLFEILNYLVRKSA 217
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JRR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JRR)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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