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(-) Description

Title :  STRUCTURE OF ACTIVE BETA-ARRESTIN1 BOUND TO A G PROTEIN-COUPLED RECEPTOR PHOSPHOPEPTIDE
 
Authors :  A. K. Shukla, A. Manglik, A. C. Kruse, K. Xiao, R. I. Reis, W. C. Tseng, D. P D. Hilger, S. Uysal, L. H. Huang, M. Paduch, P. T. Shukla, A. Koide, S. Ko W. I. Weis, A. A. Kossiakoff, B. K. Kobilka, R. J. Lefkowitz
Date :  20 Mar 13  (Deposition) - 17 Apr 13  (Release) - 23 Oct 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,H,L,V
Biol. Unit 1:  A,V  (1x)
Biol. Unit 2:  H,L  (1x)
Biol. Unit 3:  A,H,L,V  (1x)
Keywords :  Arrestin, Gpcr, G-Protein Coupled Receptor, Signaling, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. K. Shukla, A. Manglik, A. C. Kruse, K. Xiao, R. I. Reis, W. C. Tseng, D. P. Staus, D. Hilger, S. Uysal, L. Y. Huang, M. Paduch, P. Tripathi-Shukla, A. Koide, S. Koide, W. I. Weis, A. A. Kossiakoff, B. K. Kobilka, R. J. Lefkowitz
Structure Of Active Beta-Arrestin-1 Bound To A G-Protein-Coupled Receptor Phosphopeptide.
Nature V. 497 137 2013
PubMed-ID: 23604254  |  Reference-DOI: 10.1038/NATURE12120

(-) Compounds

Molecule 1 - BETA-ARRESTIN-1
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX4T
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ARRB1
    Organism Common: BROWN RAT,RAT,RATS
    Organism Scientific: RATTUS NORVEGICUS
    Organism Taxid: 10116
    Synonym: ARRESTIN BETA-1
 
Molecule 2 - FAB30 HEAVY CHAIN
    Chains: H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: 55244
    Expression System Taxid: 562
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 3 - FAB30 LIGHT CHAIN
    Chains: L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: 55244
    Expression System Taxid: 562
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
 
Molecule 4 - VASOPRESSIN V2 RECEPTOR PHOSPHOPEPTIDE
    Chains: V
    Engineered: YES
    Fragment: UNP RESIDUES 343-371
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : AHLV
Biological Unit 1 (1x): A  V
Biological Unit 2 (1x):  HL 
Biological Unit 3 (1x): AHLV

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 17)

Asymmetric Unit (5, 17)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2EDO6Ligand/Ion1,2-ETHANEDIOL
3PRO1Mod. Amino AcidPROLINE
4SEP5Mod. Amino AcidPHOSPHOSERINE
5TPO3Mod. Amino AcidPHOSPHOTHREONINE
Biological Unit 1 (3, 9)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
3PRO-1Mod. Amino AcidPROLINE
4SEP5Mod. Amino AcidPHOSPHOSERINE
5TPO3Mod. Amino AcidPHOSPHOTHREONINE
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO5Ligand/Ion1,2-ETHANEDIOL
3PRO1Mod. Amino AcidPROLINE
4SEP-1Mod. Amino AcidPHOSPHOSERINE
5TPO-1Mod. Amino AcidPHOSPHOTHREONINE
Biological Unit 3 (4, 15)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO6Ligand/Ion1,2-ETHANEDIOL
3PRO1Mod. Amino AcidPROLINE
4SEP5Mod. Amino AcidPHOSPHOSERINE
5TPO3Mod. Amino AcidPHOSPHOTHREONINE

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR A:304 , LEU A:305 , LEU A:306BINDING SITE FOR RESIDUE CL A 401
02AC2SOFTWAREHIS A:210 , HIS A:353 , PRO A:354 , HOH A:554 , SER H:34 , ARG H:103 , PHE H:105 , EDO H:304 , HOH H:427BINDING SITE FOR RESIDUE EDO A 402
03AC3SOFTWARETYR H:63 , LYS H:68BINDING SITE FOR RESIDUE CL H 301
04AC4SOFTWARETYR H:63 , LYS H:68 , GLY H:69 , PHE H:71 , THR H:72BINDING SITE FOR RESIDUE EDO H 302
05AC5SOFTWAREASP A:297 , TYR H:58 , GLN H:104 , TRP H:106BINDING SITE FOR RESIDUE EDO H 303
06AC6SOFTWAREEDO A:402 , ASN H:31 , SER H:34BINDING SITE FOR RESIDUE EDO H 304
07AC7SOFTWARELYS L:93 , TYR L:94 , VAL L:95 , PRO L:303BINDING SITE FOR RESIDUE EDO L 301
08AC8SOFTWARETYR H:107 , ALA L:33 , SER L:51 , TYR L:92BINDING SITE FOR RESIDUE EDO L 302
09AC9SOFTWARETYR H:107 , TYR L:92 , EDO L:301BINDING SITE FOR RESIDUE PRO L 303
10BC1SOFTWARETHR A:6 , ARG A:7 , VAL A:8 , LYS A:10 , LYS A:11 , ALA A:12 , TYR A:21 , ARG A:25 , ARG A:62 , TYR A:63 , ARG A:65 , LEU A:71 , GLY A:72 , LEU A:73 , THR A:74 , PHE A:75 , ARG A:76 , LYS A:77 , ARG A:103 , LYS A:107 , THR A:136 , LYS A:138 , ARG A:161 , ARG A:165 , LEU A:166 , LYS A:294 , HOH A:506 , HOH A:518 , SER L:31 , ARG L:67 , HOH V:401 , HOH V:402 , HOH V:403 , HOH V:404BINDING SITE FOR CHAIN V OF VASOPRESSIN V2 RECEPTOR PHOSPHOPEPTIDE

(-) SS Bonds  (3, 3)

Asymmetric Unit
No.Residues
1H:25 -H:99
2H:150 -H:206
3L:24 -L:89

(-) Cis Peptide Bonds  (7, 7)

Asymmetric Unit
No.Residues
1Phe A:87 -Pro A:88
2Phe H:105 -Trp H:106
3Phe H:156 -Pro H:157
4Glu H:158 -Pro H:159
5Ser L:8 -Pro L:9
6Val L:95 -Pro L:96
7Tyr L:141 -Pro L:142

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JQI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JQI)

(-) Exons   (0, 0)

(no "Exon" information available for 4JQI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:353
                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains d4jqia1 A:6-175 Arrestin                                                                                                                                                  --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....eeeee...eee........eeeeeee.........eeeeeeeeeee.........eeeeeeeeeeeeeee..........hhhhhhhhhhhh..eeeeee.........eee...........eeeeeeeeee........hhh.eeeeeeeee...........eeeeee........eeeeeee...ee.....eeeeeeeee.....eeeeeeeeeeeeeee...eeeeeeeeeeeee.......eeeeeeeee.............eee......................eeeeeeeeeeeeee.............eeeeeeeee.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jqi A   6 TRVFKKASPNGKLTVYLGKRDFVDHIDLVDPVDGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVLGLTFRKDLFVANVQSFPPAPEDKKPLTRLQERLIKKLGEHAYPFTFEIPPNLPCSVTLQPGPEDTGKACGVDYEVKAFCAENLEEKIHKRNSVRLVIRKVQYAPERPGPQPTAETTRQFLMSDKPLHLEASLDKEIYYHGEPISVNVHVTNNTNKTVKKIKISVRQYADICLFNTAQYKCPVAMEEADDTVAPSSTFCKVYTLTPFLANNREKRGLALDGKLKHEDTNLASSTLLREREILGIIVSYKVKVKLVVSRGGLLGDLASSDVAVELPFTLMHPKPKEEPP 361
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305  ||   318       328       338       348       358   
                                                                                                                                                                                                                                                                                                                                        308|                                                 
                                                                                                                                                                                                                                                                                                                                         312                                                 


Chain H from PDB  Type:PROTEIN  Length:204
                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee..eee.....eeeeeeee......eeeeeeee.....eeeeeeee....eeee.......eeeeee....eeeeee...hhhhheeeeeeeee........ee...eeeee........eeeee...eeeeeeeee.....eeee........eee...ee.....eeeeeeee.....eeeeeehhhheeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4jqi H   5 VQLVESGGGLVQPGGSLRLSCAASGFNVYSSSIHWVRQAPGKGLEWVASISSYYGYTYYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSRQFWYSGLDYWGQGTLVTVSSASTKGPSVFPLAPAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSYICNVNHKPSNTKVDKKVEP 223
                                    14        24        34        44        54        64        74        84        94       104       114       124       134 ||    153       163       173       183       193   ||  209       219    
                                                                                                                                                             136|                                                197|                   
                                                                                                                                                              146                                                 204                   


Chain L from PDB  Type:PROTEIN  Length:185
                                                                                                                                                                                                                         
               SCOP domains d4jqil1 L:1-108 automated matches                                                                           d4jqil2 L:109-190 automated matches                                           SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee..eeee.....eeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee.........eeeeee......ee...eeeee.......eeeee..hhhhhh..eeeeeeeeeee..............eeeee.........eeeeeeeeeehhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jqi L   1 SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQYKYVPVTFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKH 190
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150||     165       175       185     
                                                                                                                                                                                151|                                 
                                                                                                                                                                                 157                                 


Chain V from PDB  Type:PROTEIN  Length:21
                                                     
               SCOP domains --------------------- SCOP domains
               CATH domains --------------------- CATH domains
               Pfam domains --------------------- Pfam domains
         Sec.struct. author ...eee.......eeee.... Sec.struct. author
                 SAPs(SNPs) --------------------- SAPs(SNPs)
                    PROSITE --------------------- PROSITE
                 Transcript --------------------- Transcript
                 4jqi V 346 RtPPsLGPEsCttAsssLAKD 368
                             |  |  357 || |||367 
                           347-TPO ||| || 364-SEP
                              350-SEP| || ||     
                                 353|| || ||     
                                  356| || ||     
                                   357-SEP||     
                                     359-TPO     
                                      360-TPO    
                                        362-SEP  
                                         363-SEP
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (3, 3)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JQI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JQI)

(-) Gene Ontology  (109, 117)

Asymmetric Unit(hide GO term definitions)

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