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(-) Description

Title :  STRUCTURE OF WILD TYPE PSEUDOMONAS AERUGINOSA FABF (KASII) IN COMPLEX WITH LIGAND
 
Authors :  B. Baum, R. Brenk, E. Jaenicke
Date :  19 Mar 13  (Deposition) - 02 Apr 14  (Release) - 26 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.67
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Fatty Acid Biosynthesis, Fabf, Kasii, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Baum, L. S. Lecker, M. Zoltner, E. Jaenicke, R. Schnell, W. N. Hunter R. Brenk
Structures Of Pseudomonas Aeruginosa Beta-Ketoacyl-(Acyl-Carrier-Protein) Synthase Ii (Fabf) And A C164Q Mutant Provide Templates For Antibacterial Drug Discovery And Identify A Buried Potassium Ion And A Ligand-Binding Site That Is An Artefact Of The Crystal Form
Acta Crystallogr F Struct V. 71 1020 2015 Biol Commun
PubMed-ID: 26249693  |  Reference-DOI: 10.1107/S2053230X15010614

(-) Compounds

Molecule 1 - 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 2
    Chains: A
    EC Number: 2.3.1.179
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PNIC-BSA4
    Expression System Strain: BL21(DE3) PLYSS
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: FABF, FABF1, PA2965
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 208964
    Strain: ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 3)

Asymmetric Unit (3, 3)
No.NameCountTypeFull Name
11LR1Ligand/Ion3-(BENZOYLAMINO)-2-HYDROXYBENZOIC ACID
2K1Ligand/IonPOTASSIUM ION
3MG1Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
11LR2Ligand/Ion3-(BENZOYLAMINO)-2-HYDROXYBENZOIC ACID
2K-1Ligand/IonPOTASSIUM ION
3MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:61 , TYR A:62 , PHE A:83 , VAL A:86 , ARG A:87 , ARG A:128 , ARG A:129 , LEU A:151 , ARG A:207 , MG A:502 , HOH A:895 , HOH A:947 , HOH A:948BINDING SITE FOR RESIDUE 1LR A 501
2AC2SOFTWARE1LR A:501 , HOH A:946 , HOH A:947 , HOH A:948 , HOH A:949 , HOH A:950BINDING SITE FOR RESIDUE MG A 502
3AC3SOFTWAREASN A:302 , ALA A:303 , GLU A:350 , SER A:395 , ASN A:396BINDING SITE FOR RESIDUE K A 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JPF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JPF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JPF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JPF)

(-) Exons   (0, 0)

(no "Exon" information available for 4JPF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:411
                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains d4jpfa1 A:3-252 automated matches                                                                                                                                                                                                                         d4jpfa2 A:253-413 automated matches                                                                                                                               SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee.....hhhhhhhhhhhh....ee............ee......hhhhh.hhhhhh..hhhhhhhhhhhhhhhhhhh......hhh.eeeeee....hhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhh....ee...hhhhhhhhhhhhhhhhhhh....eeeeeeee...hhhhhhhhhhh........hhhhh...............eeeeeeeeehhhhhhh.....eeeeeeeeee...........hhhhhhhhhhhhhhhh.hhhhh.eee.....hhhhhhhhhhhhhhhhhhhhhh.eee.hhhhhh.hhhhhhhhhhhhhhhhhhhhee......................ee....eeeeeeee...eeeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jpf A   3 RRRVVITGMGMLSPLGLDVPSSWEGILAGRSGIAPIEHMDLSAYSTRFGGSVKGFNVEEYLSAKEARKLDLFIQYGLAASFQAVRDSGLEVTDANRERIGVSMGSGIGGLTNIENNCRSLFEQGPRRISPFFVPGSIINMVSGFLSIHLGLQGPNYALTTACTTGTHSIGMAARNIAYGEADVMVAGGSEMAACGLGLGGFGAARALSTRNDEPTRASRPWDRDRDGFVLSDGSGALVLEELEHARARGARIYAELVGFGMSGDAFHMTAPPEDGAGAARCMKNALRDAGLDPRQVDYINAHGTSTPAGDIAEIAAVKSVFGEHAHALSMSSTKSMTGHLLGAAGAVEAIFSVLALRDQVAPPTINLDNPDEGCDLDLVAHEAKPRKIDVALSNSFGFGGTNGTLVFRRFA 413
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JPF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JPF)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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UniProtKB/TrEMBL
        G3XDA2_PSEAE | G3XDA2: 4b7v

(-) Related Entries Specified in the PDB File

4b7v 4jb6