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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTA86-630 MUTANT D370A COMPLEXED WITH L-TETRAHYDRO-2-FUROIC ACID
 
Authors :  J. J. Tanner
Date :  16 Mar 13  (Deposition) - 28 Aug 13  (Release) - 28 Aug 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  Beta/Alpha Barrel, Flavoenzyme, Proline Catabolism, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Zhu, A. M. Haile, R. K. Singh, J. D. Larson, D. Smithen, J. Y. Chan, J. J. Tanner, D. F. Becker
Involvement Of The Beta 3-Alpha 3 Loop Of The Proline Dehydrogenase Domain In Allosteric Regulation Of Membrane Association Of Proline Utilization A.
Biochemistry V. 52 4482 2013
PubMed-ID: 23713611  |  Reference-DOI: 10.1021/BI400396G

(-) Compounds

Molecule 1 - BIFUNCTIONAL PROTEIN PUTA
    Chains: A
    EC Number: 1.5.99.8, 1.5.1.12
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RESIDUES 86-669
    Gene: PUTA, POAA, B1014, JW0999
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 83333
    Strain: K12
    Synonym: PROLINE DEHYDROGENASE, PROLINE OXIDASE, DELTA-1-PYRROLINE-5- CARBOXYLATE DEHYDROGENASE, P5C DEHYDROGENASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

Asymmetric Unit (3, 4)
No.NameCountTypeFull Name
11PE2Ligand/IonPENTAETHYLENE GLYCOL
2FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3TFB1Ligand/IonTETRAHYDROFURAN-2-CARBOXYLIC ACID
Biological Unit 1 (3, 4)
No.NameCountTypeFull Name
11PE2Ligand/IonPENTAETHYLENE GLYCOL
2FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3TFB1Ligand/IonTETRAHYDROFURAN-2-CARBOXYLIC ACID
Biological Unit 2 (3, 8)
No.NameCountTypeFull Name
11PE4Ligand/IonPENTAETHYLENE GLYCOL
2FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3TFB2Ligand/IonTETRAHYDROFURAN-2-CARBOXYLIC ACID

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:370 , ALA A:371 , VAL A:402 , GLN A:404 , TYR A:406 , ARG A:431 , VAL A:433 , LYS A:434 , GLY A:435 , ALA A:436 , TYR A:437 , TRP A:438 , TYR A:456 , THR A:457 , ARG A:458 , LYS A:459 , THR A:462 , ALA A:485 , THR A:486 , HIS A:487 , ASN A:488 , GLN A:511 , CYS A:512 , LEU A:513 , TYR A:540 , ARG A:556 , GLU A:559 , THR A:564 , SER A:565 , PHE A:566 , TFB A:2002 , HOH A:2101 , HOH A:2105 , HOH A:2106 , HOH A:2109 , HOH A:2111 , HOH A:2183 , HOH A:2280BINDING SITE FOR RESIDUE FAD A 2001
2AC2SOFTWARELYS A:329 , ALA A:436 , TYR A:540 , TYR A:552 , ARG A:555 , ARG A:556 , FAD A:2001 , HOH A:2114BINDING SITE FOR RESIDUE TFB A 2002
3AC3SOFTWAREARG A:144 , GLU A:170 , ARG A:174 , TRP A:211 , LEU A:254 , MET A:255 , LEU A:557 , ASN A:560 , HOH A:2290BINDING SITE FOR RESIDUE 1PE A 2003
4AC4SOFTWAREARG A:425 , ARG A:426 , LEU A:474 , ASN A:478 , LEU A:479 , LEU A:498BINDING SITE FOR RESIDUE 1PE A 2004

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JNY)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JNY)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JNY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JNY)

(-) Exons   (0, 0)

(no "Exon" information available for 4JNY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:491
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains d4jnya1 A:87-261 automated matches                                                                                                            d4jnya2 A:262-610 Proline dehydrohenase domain of bifunctional PutA protein                                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhh...hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhh..hhhhhhhh...hhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhhhhhh...hhhhhhh.hhhhhh...eeeeee......hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh.eeeehhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee...hhhhhhhhhhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhh....eeeeee..hhhhhhhhhhhh....hhhhheeeee...hhhhhh....hhhhh.....eeeeeee.hhhhhhhhhhhhhhhhhh..hhhhhh.....hhhhhh.hhhhhhhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jny A  87 PQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALLFVNAATWGLLFASLSRSLNRIIEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIAAEESDRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRD 610
                                    96       106       116       126       136       146       156       166       176       205       215|      235||     249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459       469       479       489       499       509       519       529       539       549       559       569       579       589       599       609 
                                                                                                                           184|        215|       236|                                                                                                                                                                                                                                                                                                                                                                                 
                                                                                                                            204         226        241
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JNY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JNY)

(-) Gene Ontology  (21, 21)

Asymmetric Unit(hide GO term definitions)

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  4jny
    Family and Domain Information: ProDom | SYSTERS
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  PUTA_ECOLI | P09546
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  1.5.1.12
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  1.5.99.8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PUTA_ECOLI | P09546: 1tiw 1tj0 1tj1 1tj2 2ay0 2fzm 2fzn 2gpe 2rbf 3e2q 3e2r 3e2s 3itg 4jnz 4o8a

(-) Related Entries Specified in the PDB File

4jnz