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(-) Description

Title :  CRYSTAL STRUCTURE OF SYNTHETIC PROTEIN IN COMPLEX WITH DOUBLE PY PEPTIDE
 
Authors :  N. Yasui, L. Smith, S. Koide
Date :  14 Mar 13  (Deposition) - 23 Apr 14  (Release) - 06 Aug 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.41
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Synthetic Protein, Binding To Double Py Containing Sequence, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Yasui, G. M. Findlay, G. D. Gish, M. S. Hsiung, J. Huang, M. Tucholska L. Taylor, L. Smith, W. C. Boldridge, A. Koide, T. Pawson, S. Koide
Directed Network Wiring Identifies A Key Protein Interactio In Embryonic Stem Cell Differentiation.
Mol. Cell V. 54 1034 2014
PubMed-ID: 24910098  |  Reference-DOI: 10.1016/J.MOLCEL.2014.05.002

(-) Compounds

Molecule 1 - CLAMP SHC1_PY239/240
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
 
Molecule 2 - SHC-TRANSFORMING PROTEIN 1
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 344-356
    Gene: SHC, SHC1, SHCA
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: SHC-TRANSFORMING PROTEIN 3, SHC-TRANSFORMING PROTEIN A, SRC HOMOLOGY 2 DOMAIN-CONTAINING-TRANSFORMING PROTEIN C1, SH2 DOMAIN PROTEIN C1

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1PTR2Mod. Amino AcidO-PHOSPHOTYROSINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:21 , ARG A:22 , ASN A:23 , ARG A:47 , ARG A:66 , SER A:68 , GLU A:69 , SER A:70 , SER A:76 , GLN A:86 , HIS A:87 , PHE A:88 , LYS A:89 , LEU A:100 , TRP A:101 , VAL A:102 , TYR A:137 , TYR A:138 , VAL A:139 , SER A:140 , HIS A:187 , ARG A:188 , HOH B:301BINDING SITE FOR CHAIN B OF SHC-TRANSFORMING PROTEIN 1

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JMH)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Gly A:1 -Ser A:2
2Gly A:151 -Asn A:152
3His A:187 -Arg A:188

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JMH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JMH)

(-) Exons   (0, 0)

(no "Exon" information available for 4JMH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:200
                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhh.............ee.............hhhhhhhhhhh.....eeeeee.......eeeeeee..eeeeee.ee.....ee.................eeeeee..eeeee.....hhh.eeeeeeeeee.......eeeeee....eeee.......eeeeeeeeee.........eeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jmh A   1 GSVKFNSLDELVDYHRSTSVSRNQQIFLRDIGGGGHPWYKGKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWVGGSGGSVSSVPTKLEVVAATPTSLLISWDAIWYPYYVSYYRITYGETGGNSPVQEFTVPGYSSTATISGLSPGVDYTITIYAKYHRAKYYSSPISINYRT 202
                                    10        20        30 ||     42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202
                                                          32|                                                                                                                                                                       
                                                           35                                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:8
                                        
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ........ Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                 4jmh B 237 HQyyNDFP 244
                              ||    
                            239-PTR 
                             240-PTR
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JMH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JMH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JMH)

(-) Gene Ontology  (60, 60)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
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    Gly A:151 - Asn A:152   [ RasMol ]  
    His A:187 - Arg A:188   [ RasMol ]  
 

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  SHC1_HUMAN | P29353
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SHC1_HUMAN | P29353: 1mil 1n3h 1oy2 1qg1 1shc 1tce 1wcp 2l1c 4xwx 5czi

(-) Related Entries Specified in the PDB File

4jmg