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(-) Description

Title :  ENDURACIDIDINE BIOSYNTHESIS ENZYME MPPR COMPLEXED WITH THE CONDENSATION PRODUCT OF PYRUVATE AND IMIDAZOLE 4-CARBOXALDEHYDE
 
Authors :  N. R. Silvaggi
Date :  13 Mar 13  (Deposition) - 03 Jul 13  (Release) - 17 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.67
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Acetoacetate Decarboxylase-Like, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. M. Burroughs, R. W. Hoppe, N. C. Goebel, B. H. Sayyed, T. J. Voegtline A. W. Schwabacher, T. M. Zabriskie, N. R. Silvaggi
Structural And Functional Characterization Of Mppr, An Enduracididine Biosynthetic Enzyme From Streptomyces Hygroscopicus: Functional Diversity In The Acetoacetate Decarboxylase-Like Superfamily.
Biochemistry V. 52 4492 2013
PubMed-ID: 23758195  |  Reference-DOI: 10.1021/BI400397K

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN MPPR
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PE-SUMO
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: MPPR
    Organism Scientific: STREPTOMYCES HYGROSCOPICUS
    Organism Taxid: 1912

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
14IC2Ligand/Ion(3E)-4-(1H-IMIDAZOL-4-YL)BUT-3-ENOIC ACID
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
14IC4Ligand/Ion(3E)-4-(1H-IMIDAZOL-4-YL)BUT-3-ENOIC ACID

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:58 , TRP A:98 , PHE A:116 , GLU A:118 , PRO A:145 , ARG A:148 , GLN A:152 , LYS A:156 , GLU A:283 , HOH A:892BINDING SITE FOR RESIDUE 4IC A 500
2AC2SOFTWAREPHE B:58 , TRP B:98 , PHE B:116 , GLU B:118 , PRO B:145 , ARG B:148 , GLN B:152 , LYS B:156 , GLU B:283 , HOH B:865BINDING SITE FOR RESIDUE 4IC B 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JMD)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Leu A:40 -Pro A:41
2Pro A:54 -Pro A:55
3Leu B:40 -Pro B:41
4Pro B:54 -Pro B:55

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JMD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JMD)

(-) Exons   (0, 0)

(no "Exon" information available for 4JMD)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:257
                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......................eeeeeeeeeeeee.hhhhhhh......ee.....eeeeeeeeeeeee..hhhhhhhhhheeeeeeeeeeeee..eeeeeeeeeee.hhhhhhhhhhhh..eee.eeee.................eeeeeeee..eeeeeeeeeeeeee...hhhhh...eeee.........eeeeeeeeeeee..eeeeeeeeee....hhhhhh....eeeeeeeeeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jmd A  34 GPVGYSLPLSPTGESAMLTPPPWHFSGEVVMVDYRVDPDAARRFLPPGLEPGADPGAAAAVFATWQWCSQDGAELTDPGRCQFGEFLILLSCEFEGRPMARCPYAWVDQAVPMMRGWVQGMPKQFGVIHQSRPVTVGKAGSRLAPGGRFDGALSVHGRRVVEASVTVDRSTDQPPALHDVPLAHTLVFPEWVPRPRLVASEVSDVEFSPIWTGSGDLTFFDGLGDDFGALAPLEVGSGHVFSYGETLHGGRLLSDYS 295
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223  ||   238       248       258       268       278       288       
                                                                                                                                                                                                                          226|                                                               
                                                                                                                                                                                                                           232                                                               


Chain B from PDB  Type:PROTEIN  Length:262
                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........................eeeeeeeeeeeee.hhhhhhh......ee.....eeeeeeeeeeeee..hhhhhhhhhheeeeeeeeeeeee..eeeeeeeeeee.hhhhhhhhhhhh..eee.eeee.................eeeeeeee..eeeeeeeeeeeeee...hhhhh...eeee..........eeeeeeeeeeee..eeeeeeeeee....hhhhhh....eeeeeeeeeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jmd B  30 PGSAGPVGYSLPLSPTGESAMLTPPPWHFSGEVVMVDYRVDPDAARRFLPPGLEPGADPGAAAAVFATWQWCSQDGAELTDPGRCQFGEFLILLSCEFEGRPMARCPYAWVDQAVPMMRGWVQGMPKQFGVIHQSRPVTVGKAGSRLAPGGRFDGALSVHGRRVVEASVTVDRSTDQPPALHDVPLAHTLVFPEWVPPRPRLVASEVSDVEFSPIWTGSGDLTFFDGLGDDFGALAPLEVGSGHVFSYGETLHGGRLLSDYS 295
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219      |233       243       253       263       273       283       293  
                                                                                                                                                                                                                              226|                                                                
                                                                                                                                                                                                                               231
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JMD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JMD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JMD)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q643B8_STRHY | Q643B8: 4jm3 4jmc 4jme

(-) Related Entries Specified in the PDB File

4jm3 4jmc 4jme