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(-) Description

Title :  STRUCTURE OF HUMAN CYTOMEGALOVIRUS IMMUNE MODULATOR UL141
 
Authors :  I. Nemcovicova, D. M. Zajonc
Date :  13 Mar 13  (Deposition) - 26 Feb 14  (Release) - 19 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.25
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Viral Protein In Complex With Human Receptor, Immunoglobulin-Like V- Set Folg Of N-Terminal Domain; Ig-Like Beta Sandwich Domain, Viral Immunomodulator, Host-Virus Interaction, Trail-R2, Cd155, Glycosylation, Membrane, Cell Adhesion (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Nemcovicova, D. M. Zajonc
The Structure Of Cytomegalovirus Immune Modulator Ul141 Highlights Structural Ig-Fold Versatility For Receptor Binding.
Acta Crystallogr. , Sect. D V. 70 851 2014
PubMed-ID: 24598754  |  Reference-DOI: 10.1107/S1399004713033750

(-) Compounds

Molecule 1 - PROTEIN UL141
    Chains: A, B
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Expression System Vector: BACULOVIRUS
    Fragment: UL141 ECTODOMAIN, UNP RESIDUES 30-279
    Organism Common: HHV-5
    Organism Scientific: HUMAN HERPESVIRUS 5
    Organism Taxid: 295027
    Strain: MERLIN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 10)

Asymmetric/Biological Unit (1, 10)
No.NameCountTypeFull Name
1NAG10Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:117 , GLN B:120BINDING SITE FOR LINKED RESIDUES A 501 to 502
2AC2SOFTWAREGLY A:60 , ASN A:132BINDING SITE FOR LINKED RESIDUES A 503 to 504
3AC3SOFTWAREASN A:147 , SER A:149 , HIS A:150BINDING SITE FOR LINKED RESIDUES A 505 to 506
4AC4SOFTWAREGLY B:60 , GLN B:62 , ASN B:132BINDING SITE FOR LINKED RESIDUES B 301 to 302
5AC5SOFTWAREASP A:96 , ASN B:147 , SER B:149 , HIS B:150BINDING SITE FOR LINKED RESIDUES B 303 to 304

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:67 -A:143
2A:84 -A:234
3B:67 -B:143
4B:84 -B:234

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Pro B:32 -Phe B:33
2Glu B:229 -Glu B:230

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JM0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JM0)

(-) Exons   (0, 0)

(no "Exon" information available for 4JM0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee...........ee.....eeeeeeeee.....eeeeeeee.......eeeeee.....eeee.hhh.....eeeeee...eeeeeeeee.hhhh.eeeeeeee....eeeeeeeeee...................hhh.eee.......eee........hhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jm0 A  39 AEKMWAENYETTSPAPVLVAEGEQVTIPCTVMTHSWPMVSIRARFCRSHDGSDELILDAVKGHRLMNGLQYRLPYATWNFSQLHLGQIFSLTFNVSTDTAGMYECVLRNYSHGLIMQRFVILTQLEPALGRYSLGDQIWSPTPWRLRNHDCGMYYFYIGRAPDRCWTVIQRYRLP 244
                                    48        58        68        78        88        98       108       118       128       138       148       158     ||179       189       199   ||  215||     239     
                                                                                                                                                       164|                        203|   216|             
                                                                                                                                                        176                         210    231             


Chain B from PDB  Type:PROTEIN  Length:183
                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee...........ee.....eeeeeeeee.....eeeeeeee.......eeeeee.....eeee.hhh.....eeeeee...eeeeeeeee.hhhh.eeeeeeee...eeeeeeeeeee.....................hhhhh....................hhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jm0 B  32 PFATADIAEKMWAENYETTSPAPVLVAEGEQVTIPCTVMTHSWPMVSIRARFCRSHDGSDELILDAVKGHRLMNGLQYRLPYATWNFSQLHLGQIFSLTFNVSTDTAGMYECVLRNYSHGLIMQRFVILTQLETLPALGRYSLGDQIWSPTPWRLRNHDCGMYFYIGREEPDRCWTVIQRYRL 243
                                    41        51        61        71        81        91       101       111       121       131       141       151       161    || 180       190       200 ||    230       240   
                                                                                                                                                                166|                       202|  215|              
                                                                                                                                                                 176                        210   229
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JM0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JM0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JM0)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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  UL141_HCMVM | Q6RJQ3
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 Related Entries

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UniProtKB/Swiss-Prot
        UL141_HCMVM | Q6RJQ3: 4i9x

(-) Related Entries Specified in the PDB File

4i9x STRUCTURE OF HCMV UL141 BOUND TO TRAIL-R2