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(-) Description

Title :  CRYSTAL STRUCTURE OF 5-CARBOXYMETHYL-2-HYDROXYMUCONATE DELTA-ISOMERASE
 
Authors :  S. Eswaramoorthy, S. Chamala, B. Evans, F. Foti, A. Gizzi, B. Hillerich J. Lafleur, R. Seidel, G. Villigas, W. Zencheck, N. Al Obaidi, S. C. Al S. Swaminathan, New York Structural Genomics Research Consort (Nysgrc)
Date :  07 Mar 13  (Deposition) - 01 May 13  (Release) - 01 May 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.76
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Nysgrc, Psi-Biology, Structural Genomics, New York Structural Genomics Research Consortium, Alpha-Beeta, Trimer, Homoprotocatechuate Catabolic Pathway, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Eswaramoorthy, S. C. Almo, S. Swaminathan
Crystal Structure Of 5-Carboxymethyl-2-Hydroxymuconate Delta-Isomerase
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - 5-CARBOXYMETHYL-2-HYDROXYMUCONATE DELTA-ISOMERASE
    Chains: A, B, C
    EC Number: 5.3.3.10
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET3A
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: BB0738, HPAF
    Organism Scientific: BORDETELLA BRONCHISEPTICA
    Organism Taxid: 257310
    Strain: ATCC BAA-588 / NCTC 13252 / RB50

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 16)

Asymmetric/Biological Unit (2, 16)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
2SO44Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:47 , GLY A:134 , ASN A:135 , LEU A:136 , HIS A:137 , GLY B:117 , LEU B:118BINDING SITE FOR RESIDUE SO4 A 201
2AC2SOFTWAREARG B:87 , SER B:88 , VAL B:91BINDING SITE FOR RESIDUE SO4 B 201
3AC3SOFTWAREARG B:47 , GLY B:134 , ASN B:135 , LEU B:136 , HIS B:137 , GLY C:117 , LEU C:118 , HOH C:344BINDING SITE FOR RESIDUE SO4 B 202
4AC4SOFTWAREGLY A:117 , LEU A:118 , GLY C:134 , ASN C:135 , LEU C:136 , HIS C:137BINDING SITE FOR RESIDUE SO4 C 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JJ9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JJ9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JJ9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JJ9)

(-) Exons   (0, 0)

(no "Exon" information available for 4JJ9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:152
                                                                                                                                                                                        
               SCOP domains d4jj9a_ A: automated matches                                                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhh..eeeeeee.hhhhh.hhhhhhhhhhhhhh...........hhhh.eeeeeee.eeee...hhhhhhh......eeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeee....eeee...hhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jj9 A -11 VDLGTENLYFQSmPHLVILYSGNLDRDLDmGAVCRGLADAmLTVRDDEGRQVFPTGGTRVLAYPAPHYAIADGGQAGRDAGESGDYGFAYLNLRmGRGRSEAVQRRAGETIAQAARALLAPLLQQRRVGLTFQIDVGAEVYDAKFGNLHALF 140
                                    -2  |      8        18        28|       38        48        58        68        78    |   88        98       108       118       128       138  
                                        1-MSE           18-MSE     29-MSE                                                83-MSE                                                     


Chain B from PDB  Type:PROTEIN  Length:151
                                                                                                                                                                                       
               SCOP domains d4jj9b_ B: automated matches                                                                                                                            SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeeeeee.hhhh..hhhhhhhhhhhhhhh...............eeeeeee.eeee...hhhhhhh......eeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeee....eeee..hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jj9 B  -5 NLYFQSmPHLVILYSGNLDRDLDmGAVCRGLADAmLTVRDDEGRQVFPTGGTRVLAYPAPHYAIADGGQAGRDAGESGDYGFAYLNLRmGRGRSEAVQRRAGETIAQAARALLAPLLQQRRVGLTFQIDVGAEVYDAKFGNLHALFQKGEK 145
                                  |  4        14   |    24    |   34        44        54        64        74        84        94       104       114       124       134       144 
                                  1-MSE           18-MSE     29-MSE                                                83-MSE                                                          


Chain C from PDB  Type:PROTEIN  Length:145
                                                                                                                                                                                 
               SCOP domains d4jj9c_ C: automated matches                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeeee.hhhhhhhhhhhhhhhhhhhhh..........hhhh.eeeeeee.eeee...hhhhhhh......eeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeeee....eeee...hhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jj9 C  -3 YFQSmPHLVILYSGNLDRDLDmGAVCRGLADAmLTVRDDEGRQVFPTGGTRVLAYPAPHYAIADGGQAGRDAGESGDYGFAYLNLRmGRGRSEAVQRRAGETIAQAARALLAPLLQQRRVGLTFQIDVGAEVYDAKFGNLHALFQ 141
                                |    6        16 |      26  |     36        46        56        66        76      | 86        96       106       116       126       136     
                                1-MSE           18-MSE     29-MSE                                                83-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JJ9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JJ9)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 4JJ9)

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