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(-) Description

Title :  CRYSTAL STRUCTURE OF THE METALLOPEPTIDASE ZYMOGEN OF PYROCOCCUS ABYSSI ABYLYSIN
 
Authors :  M. Lopez-Pelegrin, N. Cerda-Costa, F. Martinez-Jimenez, A. Cintas-P A. Canals, J. R. Peinado, M. A. Marti-Renom, C. Lopez-Otin, J. L. Arola F. X. Gomis-Ruth
Date :  07 Mar 13  (Deposition) - 12 Jun 13  (Release) - 04 Sep 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.15
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase, Metallopeptidase Zymogen, Minigluzincin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Lopez-Pelegrin, N. Cerda-Costa, F. Martinez-Jimenez, A. Cintas-Pedrola, A. Canals, J. R. Peinado, M. A. Marti-Renom, C. Lopez-Otin, J. L. Arolas, F. X. Gomis-Ruth
A Novel Family Of Soluble Minimal Scaffolds Provides Structural Insight Into The Catalytic Domains Of Integral Membrane Metallopeptidases
J. Biol. Chem. V. 288 21279 2013
PubMed-ID: 23733187  |  Reference-DOI: 10.1074/JBC.M113.476580

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET28
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Gene: PAB3079, PYRAB02920
    Mutation: YES
    Organism Scientific: PYROCOCCUS ABYSSI
    Organism Taxid: 272844
    Strain: GE5 / ORSAY

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2ZN1Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:60 , HIS A:64 , HIS A:72 , VAL A:105BINDING SITE FOR RESIDUE ZN A 201
2AC2SOFTWARETRP A:77 , HOH A:312 , HOH A:319 , HOH A:388 , HOH A:389 , HOH A:392BINDING SITE FOR RESIDUE GOL A 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JIU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JIU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:105
                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhh.....eeee.......eeee....eeee.hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh.....hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------- Transcript
                 4jiu A   1 MVEDLLEHAKDILGYQRPVKVRIRPLKMSIARVSFKYGTITLDPAVLNLEEEEMFYILIHELAHLKAETSYHSSSFWREVEKVFPGERAKEIEDRIMTKLQRNMV 105
                                    10        20        30        40        50        60        70        80        90       100
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JIU)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)

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4jix