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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF ARCHAEOGLOBUS FULGIDUS RIO1 BOUND TO (2E)-N-BENZYL-2-CYANO-3-(PYRIDINE-4-YL)ACRYLAMIDE (WP1086)
 
Authors :  M. Mielecki, K. Krawiec, I. Kiburu, K. Grzelak, Z. Wlodzimierz, B. Kier K. Kowa, I. Fokt, S. Szymanski, S. Piotr, W. Szeja, W. Priebe, B. Lesyng N. Laronde-Leblanc
Date :  06 Mar 13  (Deposition) - 24 Apr 13  (Release) - 10 Jul 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Protein Kinase, Ribosome Biogenesis, Pre-40S, Autophosphorylation, Transferase-Transferase Inhibitor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Mielecki, K. Krawiec, I. Kiburu, K. Grzelak, W. Zagorski, B. Kierdaszuk, K. Kowa, I. Fokt, S. Szymanski, P. Swierk, W. Szeja, W. Priebe, B. Lesyng, N. Laronde-Leblanc
Development Of Novel Molecular Probes Of The Rio1 Atypical Protein Kinase.
Biochim. Biophys. Acta V. 1834 1292 2013
PubMed-ID: 23523885  |  Reference-DOI: 10.1016/J.BBAPAP.2013.03.012

(-) Compounds

Molecule 1 - RIO-TYPE SERINE/THREONINE-PROTEIN KINASE RIO1
    Chains: A
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PDEST527
    Expression System Strain: ROSETTA (TM) DE3 PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: AF_1804, RIO1
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 224325
    Strain: ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126
    Synonym: AFRIO1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
11L71Ligand/Ion(2E)-N-BENZYL-2-CYANO-3-(PYRIDIN-4-YL)PROP-2-ENAMIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:55 , SER A:56 , ALA A:61 , LYS A:80 , GLU A:148 , ILE A:150 , ILE A:211 , ASP A:212 , HOH A:452 , HOH A:469 , HOH A:471BINDING SITE FOR RESIDUE 1L7 A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JIN)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JIN)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4JIN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:254
                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeee....eeeeeeeeee..eeeeeeeeee.......hhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhh......eeeee..eeeee..ee..ee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee.......eee...eee.....eee....hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jin A   5 KKIESYLDKLRIKEKDGEERKIYAEVLDGRTLKTLYKLSAKGYITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERAKEAGVSVPQPYTYMKNVLLMEFIGEDELPAPTLVELGRELKELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIMYIDKVYFIDMGQAVTLRHPMAESYLERDVRNIIRFFSKYGVKADFEEMLKEVKGE 258
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JIN)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (9, 9)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        RIO1_ARCFU | O28471: 1zp9 1ztf 1zth 3re4

(-) Related Entries Specified in the PDB File

1zp9 THE SAME PROTEIN IN COMPLEX WITH ATP AND MN2+
1ztf THE SAME PROTEIN IN COMPLEX WITH ADENOSINE.