4JHV - JenaLib

Title :   T2-DEPLETED LACCASE FROM CORIOLOPSIS CAPERATA

Authors :   K. M. Polyakov, T. V. Fedorova, O. A. Glazunova, S. A. Kurzeev, L. G. Malo V. S. Lamzin, O. V. Koroleva

Date :   05 Mar 13 (Deposition) - 23 Apr 14 (Release) - 24 Jun 15 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.60

Chains :   Asym./Biol. Unit : A

Keywords :   Beta Sheet, 4-Copper Protein, Metal-Binding, Oxidoreductase, Laccase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   O. A. Glazunova, K. M. Polyakov, T. V. Fedorova, P. V. Dorovatovskii, O. V. Koroleva
Elucidation Of The Crystal Structure Of Coriolopsis Caperat Laccase: Restoration Of The Structure And Activity Of The Native Enzyme From The T2-Depleted Form By Copper Ions.
Acta Crystallogr. , Sect. D V. 71 854 2015
PubMed-ID: 25849396 | Reference-DOI: 10.1107/S1399004715001595

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 17)

Asymmetric/Biological Unit (6, 17)

No.	Name	Count	Type	Full Name
1	BMA	2	Ligand/Ion	BETA-D-MANNOSE
2	CU	4	Ligand/Ion	COPPER (II) ION
3	EPE	1	Ligand/Ion	4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
4	MAN	3	Ligand/Ion	ALPHA-D-MANNOSE
5	NAG	4	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
6	PG6	3	Ligand/Ion	1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE

Sites (17, 17)

Asymmetric Unit (17, 17)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:111 , HIS A:399 , HIS A:449 , HOH A:612	BINDING SITE FOR RESIDUE CU A 501
02	AC2	SOFTWARE	HIS A:64 , HIS A:66 , TRP A:107 , HIS A:109 , HIS A:451 , HOH A:612	BINDING SITE FOR RESIDUE CU A 502
03	AC3	SOFTWARE	HIS A:394 , CYS A:450 , ILE A:452 , HIS A:455	BINDING SITE FOR RESIDUE CU A 503
04	AC4	SOFTWARE	HIS A:64 , HIS A:66 , HIS A:397 , HIS A:399 , HOH A:603	BINDING SITE FOR RESIDUE CU A 504
05	AC5	SOFTWARE	GLN A:23 , ASN A:54 , MET A:57 , ALA A:155 , NAG A:506 , HOH A:1102	BINDING SITE FOR RESIDUE NAG A 505
06	AC6	SOFTWARE	ARG A:22 , HIS A:153 , LEU A:154 , ALA A:155 , VAL A:158 , NAG A:505 , BMA A:507 , HOH A:852 , HOH A:1077 , HOH A:1099	BINDING SITE FOR RESIDUE NAG A 506
07	AC7	SOFTWARE	NAG A:506 , MAN A:508 , MAN A:510 , HOH A:906 , HOH A:949 , HOH A:960 , HOH A:1080	BINDING SITE FOR RESIDUE BMA A 507
08	AC8	SOFTWARE	THR A:317 , ALA A:318 , BMA A:507 , MAN A:509 , HOH A:995 , HOH A:1117	BINDING SITE FOR RESIDUE MAN A 508
09	AC9	SOFTWARE	MAN A:508 , NAG A:511 , NAG A:512 , BMA A:513 , HOH A:854 , HOH A:1044 , HOH A:1103	BINDING SITE FOR RESIDUE MAN A 509
10	BC1	SOFTWARE	BMA A:507	BINDING SITE FOR RESIDUE MAN A 510
11	BC2	SOFTWARE	SER A:382 , PRO A:384 , ASN A:433 , MAN A:509 , NAG A:512 , HOH A:689 , HOH A:850 , HOH A:861 , HOH A:938 , HOH A:987 , HOH A:1013 , HOH A:1142	BINDING SITE FOR RESIDUE NAG A 511
12	BC3	SOFTWARE	ALA A:324 , ASN A:326 , MAN A:509 , NAG A:511 , BMA A:513 , HOH A:721 , HOH A:854 , HOH A:987 , HOH A:992	BINDING SITE FOR RESIDUE NAG A 512
13	BC4	SOFTWARE	MAN A:509 , NAG A:512 , HOH A:1087	BINDING SITE FOR RESIDUE BMA A 513
14	BC5	SOFTWARE	CYS A:485 , PRO A:486 , ASN A:489 , HOH A:652 , HOH A:846	BINDING SITE FOR RESIDUE PG6 A 514
15	BC6	SOFTWARE	ASP A:7 , THR A:9 , ASN A:28 , PRO A:132 , HIS A:133 , LYS A:134 , ASP A:135 , LEU A:136 , HOH A:789	BINDING SITE FOR RESIDUE PG6 A 515
16	BC7	SOFTWARE	THR A:164 , ALA A:165 , ASP A:166 , GLY A:265 , GLN A:359 , ASN A:360	BINDING SITE FOR RESIDUE PG6 A 516
17	BC8	SOFTWARE	GLY A:1 , THR A:37 , TYR A:127 , LYS A:134 , ASP A:140 , GLY A:309 , HOH A:716 , HOH A:723 , HOH A:745 , HOH A:888 , HOH A:1042	BINDING SITE FOR RESIDUE EPE A 517

SS Bonds (2, 2)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

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Chain A from PDB  Type:PROTEIN  Length:496
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeeeee......eeeeee........eeee...eeeeeeee...hhhhh....eeee......hhhhh..............eeeeeee.....eeeeeee...hhhhhh.eeeeeee.....hhhhh...hhh.eeeeeee...............eeee...............eeee....eeeeeeee......eeeee....eeeeee..eeeeeeee..eee....eeeeeee......eeeeeeee......hhhhh.eeeeee...................hhhhh..................eeee..eeee..eeee..........hhhhhhhh...hhhhh.....eeee....eeeeeee..........eeee....eeeee.............ee.eee......eeeeeee....eeeeeee.hhhhhhh..eeeeee...hhhhhh..hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jhv A   1 GIGPVTDLTISDGPVSPDGFTRQAILVNNQFPSPLITGNKGDRFQLNVIDNMNNHTMLKSTSIHWHGFFQHGTNWADGPAFVNQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVVYDPQDPHKDLYDVDDDSTVITLADWYHLAAKVGPAVPTADATLINGLGRSISTLNADLAVISVTKGKRYRFRLVSLSCDPNHTFSIDGHTMTVIEADSVNLKPQVVDSIQIFAAQRYSFVLNADQDIGNYWIRAMPNSGTRNFDGGVNSAILRYDGADPVEPTTTQTPSSQPLVESALTTLEGTAAPGSPTAGGVDLAINMAFGFAGGRFTINGASFTPPTVPVLLQILSGAQNAQDLLPTGSVYSLPANADIEISLPATAAAPGFPHPFHLHGHTFAVVRSAGSSTYNYANPVYRDVVSTGSPGDNVTIRFRTDNPGPWFLHCHIDFHLEAGFAVVMAEDIPDVAAVNPVPQAWSDLCPTYNALDPNDQ 496
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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (5, 5)

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	Cis Peptide Bonds
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		Phe A:392 - Pro A:393	[ RasMol ]

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