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(-) Description

Title :  CRYSTAL STRUCTURE OF A C-TERMINAL TWO DOMAIN FRAGMENT OF HUMAN BETA-2-GLYCOPROTEIN 1
 
Authors :  J. B. Bonanno, R. Toro, A. Gizzi, M. K. Chan, S. C. Garrett-Thomson, H. Pa S. Lim, B. Matikainen, A. Celikgil, S. Garforth, B. Hillerich, R. Seid J. H. Rand, S. C. Almo, New York Structural Genomics Research Con (Nysgrc), Atoms-To-Animals: The Immune Function Network (Ifn
Date :  05 Mar 13  (Deposition) - 24 Apr 13  (Release) - 24 Apr 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Glycoprotein, Psi-Biology, New York Structural Genomics Research Consortium, Nysgrc, Atoms-To-Animals: The Immune Function Network, Ifn, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. B. Bonanno, R. Toro, A. Gizzi, M. K. Chan, S. C. Garrett-Thomson, H. Patel, S. Lim, B. Matikainen, A. Celikgil, S. Garforth, B. Hillerich, R. Seidel, J. H. Rand, S. C. Almo
Crystal Structure Of A C-Terminal Two Domain Fragment Of Human Beta-2-Glycoprotein 1
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BETA-2-GLYCOPROTEIN 1
    Chains: A
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Plasmid: PIEX
    Expression System Strain: BTI-TN-5B1-4
    Expression System Taxid: 7111
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL TWO DOMAIN FRAGMENT (UNP RESIDUES 203-345)
    Gene: APOH, B2G1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: APC INHIBITOR, ACTIVATED PROTEIN C-BINDING PROTEIN, ANTICARDIOLIPIN COFACTOR, APOLIPOPROTEIN H, APO-H, BETA-2- GLYCOPROTEIN I, B2GPI, BETA(2)GPI

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:301 , LYS A:303 , HIS A:329 , LYS A:336BINDING SITE FOR RESIDUE SO4 A 401
2AC2SOFTWARELYS A:301 , LYS A:303 , TRP A:335 , LYS A:336 , THR A:337BINDING SITE FOR RESIDUE SO4 A 402
3AC3SOFTWAREARG A:210 , ASN A:213 , HIS A:235BINDING SITE FOR RESIDUE SO4 A 403

(-) SS Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1A:205 -A:248
2A:234 -A:260
3A:264 -A:315
4A:300 -A:325
5A:307 -A:345

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JHS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JHS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JHS)

(-) Exons   (0, 0)

(no "Exon" information available for 4JHS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:142
                                                                                                                                                                              
               SCOP domains d4jhsa1 A:204-262 beta2-glycoprotein I                     d4jhsa2 A:263-345 beta2-glycoprotein I                                              SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeee...........eeeeee...eeee...eee...........eeee.........eeee..eeeehhhhh........eeeeeeee....eeeeeeee.......................hhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jhs A 204 KCPFPSRPDNGFVNYPAKPTLYYKDKATFGCHDGYSLDGPEEIECTKLGNWSAMPSCKASCKVPVKKATVVYQGERVKIQEKFKNGMLHGDKVSFFCKNKEKKCSYTEDAQCIDGTIEVPKCFKEHSSLAFWKTDASDVKPC 345
                                   213       223       233       243       253       263       273       283       293       303       313       323       333       343
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Small proteins (3458)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JHS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JHS)

(-) Gene Ontology  (39, 39)

Asymmetric/Biological Unit(hide GO term definitions)

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  4jhs
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 Related Entries

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UniProtKB/Swiss-Prot
        APOH_HUMAN | P02749: 1c1z 1g4f 1g4g 1qub 2kri 3op8

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