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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN COXSACKIEVIRUS A16 UNCOATING INTERMEDIATE (SPACE GROUP I222)
 
Authors :  J. Ren, X. Wang, Z. Hu, Q. Gao, Y. Sun, X. Li, C. Porta, T. S. Walter, R. J. Gi Y. Zhao, D. Axford, M. Williams, K. Mcauley, D. J. Rowlands, W. Yin, J. W D. I. Stuart, Z. Rao, E. E. Fry
Date :  04 Mar 13  (Deposition) - 05 Jun 13  (Release) - 19 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (60x)
Keywords :  Virus, Hand-Foot-And-Mouth Disease, Picornavirus Uncoating, Pocket Factor, Icosahedral Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Ren, X. Wang, Z. Hu, Q. Gao, Y. Sun, X. Li, C. Porta, T. S. Walter, R. J. Gilbert, Y. Zhao, D. Axford, M. Williams, K. Mcauley, D. J. Rowlands, W. Yin, J. Wang, D. I. Stuart, Z. Rao, E. E. Fry
Picornavirus Uncoating Intermediate Captured In Atomic Detail.
Nat Commun V. 4 1929 2013
PubMed-ID: 23728514  |  Reference-DOI: 10.1038/NCOMMS2889

(-) Compounds

Molecule 1 - POLYPROTEIN, CAPSID PROTEIN VP1
    Chains: A
    Organism Scientific: HUMAN COXSACKIEVIRUS A16
    Organism Taxid: 31704
    Other Details: STRAIN NINGBO.CHN/028-2/2009
    Other Details - Source: GROWN IN VERO CELLS
    Strain: NINGBO.CHN/028-2/2009
 
Molecule 2 - POLYPROTEIN, CAPSID PROTEIN VP2
    Chains: B
    Organism Scientific: HUMAN COXSACKIEVIRUS A16
    Organism Taxid: 31704
    Other Details: STRAIN NINGBO.CHN/028-2/2009
    Other Details - Source: GROWN IN VERO CELLS
    Strain: NINGBO.CHN/028-2/2009
 
Molecule 3 - POLYPROTEIN, CAPSID PROTEIN VP3
    Chains: C
    Organism Scientific: HUMAN COXSACKIEVIRUS A16
    Organism Taxid: 31704
    Other Details: STRAIN NINGBO.CHN/028-2/2009
    Other Details - Source: GROWN IN VERO CELLS
    Strain: NINGBO.CHN/028-2/2009

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (60x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4JGZ)

(-) Sites  (0, 0)

(no "Site" information available for 4JGZ)

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1B:7 -B:190

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Phe B:82 -Pro B:83

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JGZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JGZ)

(-) Exons   (0, 0)

(no "Exon" information available for 4JGZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:228
                                                                                                                                                                                                                                                                    
               SCOP domains d4jgza_ A: automated matches                                                                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .................hhhhhh...eeeeeeee..........eeeee.....hhhhhhhhh.eeeeeeeeeeeeeee.........eeeeeee...........hhhhh.....eeeee.....eeeee........ee..............hhhhh..eeeeee.........eeeeeeeeeeeeeeeee.................................. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4jgz A  62 NLIETRCVLNHHSTQETAIGNFFSRAGLVSIITMPTTGTQNTDGYVNWDIDLMGYAQLRRKCELFTYMRFDAEFTFVVAKPNGELVPQLLQYMYVPPGAPKPTSRDSFAWQTATNPSVFVKMTDPPAQVSVPFMSPASAYQWFYDGYPTDLDYGQCPNNMMGTFSIRTVGIEKSPHSITLRVYMRIKHVRAWIPRPLRNQPYLFKTNPNYKGNDIKCTSTSRDKITTL 297
                                    71        81        91       101       111       121       131       141       151       161       171       181       191       201       219       229       239       249       259       269       279       289        
                                                                                                                                                                              210|                                                                              
                                                                                                                                                                               219                                                                              


Chain B from PDB  Type:PROTEIN  Length:239
                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee.......eee..eee........ee.hhh.......hhhhhh.............eeeeeeee......eeeeehhhhhh.hhhhhhhhhh.eeeeeeeeeeee......eeeeeeeeee.............hhhhhh.....ee..............hhhhh.eeeee...eeeeeeee........ee......eeeeeeeeeeee........eeeeeeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jgz B   6 ACGYSDRVAQLTIGNSTITTQEAANIVIAYGEWPEYCPDTDATAVDKPTRPDVSVNRFFTLDTKSWAKDSKGWYWKFPDVLTEVGVFGQNAQFHYLYRSGFCVHVQCNASKFHQGALLVAVLPEYVLGTIAENSHPPYATTQPGQVGAVLTHPYVLDAGIPLSQLTVCPHQWINLRTNNCATIIVPYMNTVPFDSALNHCNFGLLVIPVVPLDFNTGATSEIPITVTIAPMCAEFAGLR 249
                                    15        25        35        45        55        65        75        85        95       105       115       125       135||     150       160       170       180       190       200       210       220       230       240         
                                                                                                                                                            136|                                                                                                           
                                                                                                                                                             142                                                                                                           


Chain C from PDB  Type:PROTEIN  Length:231
                                                                                                                                                                                                                                                                       
               SCOP domains d4jgzc_ C: automated matches                                                                                                                                                                                                            SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................ee...............ee..hhhhhh..eee....hhhhh.hhhhh.eeeee.......eeeeee......hhhhhhhhhhhhhheeeeeeeeeeeeee........eeeeeee........hhhhhhh..eeeee.....eeeeeeeeeee.ee...ee.....eeeeee............eeeeeeee......eeeee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jgz C   1 GIPTELKPGTNQFLTTDDGVSAPILPGFHPTPPIHIPGEVHNLLEICRVETILEVNNLKTNETTPMQRLCFPVSVQSKTGELCAAFRADPGRDGPWQSTILGQLCRYYTQWSGSLEVTFMFAGSFMATGKMLIAYTPPGGNVPADRITAMLGTHVIWDFGLQSSVTLVVPWISNTHYRAYFDYYTTGIITIWYQTNYVVPIGAPTTAYIVALAAAQDNFTMKLCKDTEDIE 236
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       185       195       205       215       225       235 
                                                                                                                                                                                                            179|                                                   
                                                                                                                                                                                                             185
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JGZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JGZ)

(-) Gene Ontology  (36, 36)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Phe B:82 - Pro B:83   [ RasMol ]  
 
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  4jgz
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        I3W9E1_9ENTO | I3W9E1: 5c8c
UniProtKB/TrEMBL
        I3W9E1_9ENTO | I3W9E1: 4jgy 5abj 5c4w 5c9a

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 4JGZ)