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(-) Description

Title :  THE STRUCTURE OF STEROL CARRIER PROTEIN 2 FROM THE YEAST YARROWIA LIPOLYTICA
 
Authors :  F. P. De Berti, S. Capaldi, J. P. Acierno, S. Klinke, H. L. Monaco, M. R. E
Date :  04 Mar 13  (Deposition) - 18 Dec 13  (Release) - 18 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Lipid Binding Protein, Non Specific Lipid Transfer, Long Chain Fatty Acids And Coa Esters (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. P. De Berti, S. Capaldi, R. Ferreyra, N. Burgardt, J. P. Acierno, S. Klinke, H. L. Monaco, M. R. Ermacora
The Crystal Structure Of Sterol Carrier Protein 2 From Yarrowia Lipolytica And The Evolutionary Conservation Of A Large, Non-Specific Lipid-Binding Cavity.
J. Struct. Funct. Genom. V. 14 145 2013
PubMed-ID: 24241823  |  Reference-DOI: 10.1007/S10969-013-9166-6

(-) Compounds

Molecule 1 - FATTY ACID-BINDING PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET9B
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: SCP2, YALI0E01298G
    Organism Common: YEAST
    Organism Scientific: YARROWIA LIPOLYTICA
    Organism Taxid: 284591
    Strain: CX-121-1B
    Synonym: STEROL CARRIER PROTEIN 2, YLSCP2

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1CIT2Ligand/IonCITRIC ACID
2PLM2Ligand/IonPALMITIC ACID

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:1 , LEU A:2 , ARG A:17 , LYS A:66 , ARG A:98BINDING SITE FOR RESIDUE CIT A 201
2AC2SOFTWAREVAL A:90 , ILE A:117 , GLU A:118 , MET B:112BINDING SITE FOR RESIDUE PLM A 202
3AC3SOFTWARELYS A:3 , HOH A:331 , SER B:1 , LEU B:2 , ARG B:17 , GLY B:65 , LYS B:66 , ARG B:98BINDING SITE FOR RESIDUE CIT B 201
4AC4SOFTWARELEU B:89 , VAL B:90 , ALA B:96 , PHE B:100 , VAL B:111 , ALA B:114 , ALA B:115 , GLU B:118 , LEU B:121 , LYS B:122BINDING SITE FOR RESIDUE PLM B 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JGX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JGX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JGX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JGX)

(-) Exons   (0, 0)

(no "Exon" information available for 4JGX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:119
                                                                                                                                                       
               SCOP domains d4jgxa_ A: automated matches                                                                                            SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhh..hhhhhhhhhhhhheeeeeeee.....eeeeeeee.....eee..........eeeeeehhhhhhhhh...hhhhhhhh...eeeehhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 4jgx A   1 SLKVDGFTSSIIFDVIRDGLNDPSQAKQKAESIKKANAIIVFNLKNKAGKTESWYLDLKNDGDVGKGNKSPKGDADIQLTLSDDHFQQLVEGKANAQRLFMTGKLKVKGNVMKAAAIEG 119
                                    10        20        30        40        50        60        70        80        90       100       110         


Chain B from PDB  Type:PROTEIN  Length:128
                                                                                                                                                                
               SCOP domains d4jgxb_ B: automated matches                                                                                                     SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........hhhhhhhhhhhhh..hhhhhhhhhhhhheeeeeeee.....eeeeeeee....eeee..........eeeeeehhhhhhhhhh..hhhhhhhh...eee.hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jgx B   1 SLKVDGFTSSIIFDVIRDGLNDPSQAKQKAESIKKANAIIVFNLKNKAGKTESWYLDLKNDGDVGKGNKSPKGDADIQLTLSDDHFQQLVEGKANAQRLFMTGKLKVKGNVMKAAAIEGILKNAQNNL 128
                                    10        20        30        40        50        60        70        80        90       100       110       120
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JGX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JGX)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)

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