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(-) Description

Title :  CRYSTAL STRUCTURE OF A TRWG COMPONENT OF TYPE IV SECRETION SYSTEM PROTEIN FROM BARTONELLA BIRTLESII
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  27 Feb 13  (Deposition) - 05 Mar 14  (Release) - 23 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.35
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Cat Scratch Fever, Secretion, Host Specific Adhesion, Protein Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. J. Gillespie, I. Q. Phan, H. Scheib, S. Subramanian, T. E. Edwards, S. S. Lehman, H. Piitulainen, M. S. Rahman, K. E. Rennoll-Bankert, B. L. Staker, S. Taira, R. Stacy, P. J. Myler, A. F. Azad, A. T. Pulliaine
Structural Insight Into How Bacteria Prevent Interference Between Multiple Divergent Type Iv Secretion Systems.
Mbio V. 6 01867 2015
PubMed-ID: 26646013  |  Reference-DOI: 10.1128/MBIO.01867-15

(-) Compounds

Molecule 1 - TRWG COMPONENT OF TYPE IV SECRETION SYSTEM
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: BG1861
    Gene: TRWG
    Organism Scientific: BARTONELLA BIRTLESII
    Organism Taxid: 111504

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1EDO4Ligand/Ion1,2-ETHANEDIOL
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1EDO8Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:120 , HOH A:438 , HOH A:442 , HOH A:497BINDING SITE FOR RESIDUE EDO A 301
2AC2SOFTWAREASN A:108 , ARG A:109 , THR A:111 , ILE A:117 , ASN A:120 , TYR A:121 , THR A:124 , PHE A:136 , TYR A:140 , HOH A:447BINDING SITE FOR RESIDUE EDO A 302
3AC3SOFTWAREVAL A:97 , TRP A:101 , LEU A:215 , HOH A:608BINDING SITE FOR RESIDUE EDO A 303
4AC4SOFTWAREARG A:146 , HOH A:411 , HOH A:492BINDING SITE FOR RESIDUE EDO A 304

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JF8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JF8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JF8)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 4JF8)

(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                
               SCOP domains d4jf8a_ A: automated matches                                                                                                                     SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh.hhhhhhhhhhh.....hhhhhhh..eeeeeeeeeeee....eeeeeeeeeeee........eeeeeeeeeee.....hhhhhhhh...eeeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4jf8 A  89 HETSYGEVVDRYWLNQYVLNRETYDYDTIQLNYDTTALLSTAAVQQEFYKIYEGEDARDKVLSNKARITVKVRSIQPNGRGQATVRFTTQQHDSTGAVGVKQHQIATIGYTYVGAPMKSSDRLLNPLGFQVTSYRTDPEILLNN 232
                                    98       108       118       128       138       148       158       168       178       188       198       208       218       228
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JF8)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (3, 3)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

4jf8 BAGRA.18388.A, VIRB8 FROM BARTONELLA GRAHMII
4kz1 BAQUA.18388.A, VIRB8 FROM BARTONELLA QUINTANA