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(-) Description

Title :  GGGPS FROM FLAVOBACTERIUM JOHNSONIAE
 
Authors :  D. Peterhoff, B. Beer, C. Rajendran, E. P. Kumpula, E. Kapetaniou, H. Gu R. K. Wierenga, R. Sterner, P. Babinger
Date :  27 Feb 13  (Deposition) - 25 Jun 14  (Release) - 25 Jun 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.52
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Pcrb-Like, Fspp , Ggpp, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Peterhoff, B. Beer, C. Rajendran, E. P. Kumpula, E. Kapetaniou, H. Guldan, R. K. Wierenga, R. Sterner, P. Babinger
A Comprehensive Analysis Of The Geranylgeranylglyceryl Phosphate Synthase Enzyme Family Identifies Novel Members And Reveals Mechanisms Of Substrate Specificity And Quaternary Structure Organization.
Mol. Microbiol. V. 92 885 2014
PubMed-ID: 24684232  |  Reference-DOI: 10.1111/MMI.12596

(-) Compounds

Molecule 1 - GERANYLGERANYLGLYCERYL PHOSPHATE SYNTHASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET 21A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: FJOH_1584
    Organism Scientific: FLAVOBACTERIUM JOHNSONIAE
    Organism Taxid: 376686
    Strain: ATCC 17061 / DSM 2064 / UW101

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric Unit (4, 5)
No.NameCountTypeFull Name
11GP1Ligand/IonSN-GLYCEROL-1-PHOSPHATE
2MG2Ligand/IonMAGNESIUM ION
3PGE1Ligand/IonTRIETHYLENE GLYCOL
4PO41Ligand/IonPHOSPHATE ION
Biological Unit 1 (3, 6)
No.NameCountTypeFull Name
11GP2Ligand/IonSN-GLYCEROL-1-PHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3PGE2Ligand/IonTRIETHYLENE GLYCOL
4PO42Ligand/IonPHOSPHATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU A:27 , PHE A:83 , TYR A:178 , GLU A:180 , SER A:183 , GLY A:184 , GLY A:208 , GLY A:209 , GLY A:210 , GLY A:231 , THR A:232 , MG A:304 , MG A:305 , HOH A:505 , HOH A:530 , HOH A:562BINDING SITE FOR RESIDUE 1GP A 301
2AC2SOFTWARELEU A:100BINDING SITE FOR RESIDUE PGE A 302
3AC3SOFTWAREGLY A:105 , ARG A:106 , THR A:151 , GLU A:152 , HOH A:405 , HOH A:461 , HOH A:501BINDING SITE FOR RESIDUE PO4 A 303
4AC4SOFTWAREGLY A:209 , GLY A:210 , ILE A:211 , VAL A:229 , 1GP A:301BINDING SITE FOR RESIDUE MG A 304
5AC5SOFTWAREILE A:211 , THR A:232 , ALA A:233 , 1GP A:301 , HOH A:530BINDING SITE FOR RESIDUE MG A 305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JEJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JEJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:241
                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhh...eeeeeehhhhhhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhh...eeee..hhhhh.....eeeeeee.........hhhhhhhhhhhh....eeeeeeeee......hhhhhhhh.......hhhhhhhhhhhhhhhh..eeeee.........hhhhhhhhhhhh...eeee....hhhhhhhhhhhh..eeeehhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4jej A   4 KILTTIHQQILEAKKNGQKLLAILLDPDKIVWENLDHLLLKINQSPATHIFVGGSIVESTIIEDLIAQLKQKTRLPVVIFPGDPSQISPKADAILFLSLLSGRNPDYLIEYQVQAAPILKKTNLEVISTGYILIESGNETAVARVSKTEPLNRENFDLALATAQAGEMLGSKLIYLEAGSGAKKPVPLEMISVISQNVEIPIIVGGGIVDLHGIKKAYNAGADLVVIGTAFENDSHFFDSL 244
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JEJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JEJ)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (5, 5)

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(-) Related Entries Specified in the PDB File

4mm1 4nae 4naf