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(-) Description

Title :  STRUCTURE OF THE FLUORESCENCE RECOVERY PROTEIN FROM SYNECHOCYSTIS SP PCC 6803, R60K MUTANT
 
Authors :  M. Sutter, C. A. Kerfeld
Date :  25 Feb 13  (Deposition) - 29 May 13  (Release) - 26 Jun 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.52
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A (1x),C (1x)
Biol. Unit 2:  B,D  (1x)
Biol. Unit 3:  E,F  (2x)
Keywords :  Photoprotection, Non-Photochemical Quenching, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Sutter, A. Wilson, R. L. Leverenz, R. Lopez-Igual, A. Thurotte, A. E. Salmeen, D. Kirilovsky, C. A. Kerfeld
Crystal Structure Of The Frp And Identification Of The Active Site For Modulation Of Ocp-Mediated Photoprotection In Cyanobacteria.
Proc. Natl. Acad. Sci. Usa V. 110 10022 2013
PubMed-ID: 23716688  |  Reference-DOI: 10.1073/PNAS.1303673110

(-) Compounds

Molecule 1 - SLR1964 PROTEIN
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: SLR1964
    Mutation: YES
    Organism Scientific: SYNECHOCYSTIS SP.
    Organism Taxid: 1111708
    Strain: PCC 6803 / KAZUSA

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A (1x) C (1x)   
Biological Unit 2 (1x):  B D  
Biological Unit 3 (2x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 4JDQ)

(-) Sites  (0, 0)

(no "Site" information available for 4JDQ)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4JDQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4JDQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4JDQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4JDQ)

(-) Exons   (0, 0)

(no "Exon" information available for 4JDQ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:102
                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhh...hhhhhh..hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 4jdq A   8 PWSQAETQSAHALFRKAYQRELDGLLATVQAQASQITQIDDLWKLHDFLSAKKHEIDGKYDDRQSVIIFVFAQLLKEGLVQAEELTFLAADKQSKIKALARL 109
                                    17        27        37        47        57        67        77        87        97       107  


Chain B from PDB  Type:PROTEIN  Length:102
                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhh...hhhhhh..hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 4jdq B   8 PWSQAETQSAHALFRKAYQRELDGLLATVQAQASQITQIDDLWKLHDFLSAKKHEIDGKYDDRQSVIIFVFAQLLKEGLVQAEELTFLAADKQSKIKALARL 109
                                    17        27        37        47        57        67        77        87        97       107  


Chain C from PDB  Type:PROTEIN  Length:102
                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhh..hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 4jdq C   8 PWSQAETQSAHALFRKAYQRELDGLLATVQAQASQITQIDDLWKLHDFLSAKKHEIDGKYDDRQSVIIFVFAQLLKEGLVQAEELTFLAADKQSKIKALARL 109
                                    17        27        37        47        57        67        77        87        97       107  


Chain D from PDB  Type:PROTEIN  Length:97
                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh..hhhhh...hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------- Transcript
                 4jdq D  12 AETQSAHALFRKAYQRELDGLLATVQAQASQITQIDDLWKLHDFLSAKKHEIDGKYDDRQSVIIFVFAQLLKEGLVQAEELTFLAADKQSKIKALAR 108
                                    21        31        41        51        61        71        81        91       101       


Chain E from PDB  Type:PROTEIN  Length:90
                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh...hhhhhh..hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                 4jdq E  12 AETQSAHALFRKAYQRELDGLLATVQAQASQITQIDDLWKLHDFLSAYDDRQSVIIFVFAQLLKEGLVQAEELTFLAADKQSKIKALARL 109
                                    21        31        41        51      ||69        79        89        99       109
                                                                         58|                                          
                                                                          67                                          


Chain F from PDB  Type:PROTEIN  Length:90
                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh...hhhhh...hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                 4jdq F   8 PWSQAETQSAHALFRKAYQRELDGLLATVQAQASQITQIDDLWKLHDFLSAQSVIIFVFAQLLKEGLVQAEELTFLAADKQSKIKALARL 109
                                    17        27        37        47        57||      79        89        99       109
                                                                             58|                                      
                                                                              71
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4JDQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 4JDQ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4JDQ)

(-) Gene Ontology  (3, 3)

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 Related Entries

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UniProtKB/Swiss-Prot
        FRP_SYNY3 | P74103: 4jdx

(-) Related Entries Specified in the PDB File

4jdx